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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgtctactccattatacatttttttctcgaaaacttatttgcccattataataatctatatagctgcaaaagaacaattctgagcacgatttaaatggtgattcagGTGGACGGGGTGGTCAGAGAGTTGAGTACGGGAGGACCTATGTGGTGAGGCCAAAGGGAAGGCACCAAGCCACCATTGTGTGGCTTCATGGCCTAGGTGA

Basic information

species Oryza sativa
transcript LOC_Os05g51050.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51050.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G015692_T01 (Zea mays), 3'ss of exon 2
gtaatctgtctactccat-tatacatttttttctcgaaaacttatttgcccattataataatctatatagctgcaaaagaacaattctgagcacgatttaaatggtgattcagGTGGACGGGGTGGTCAGAGAGTTGAGTACGGGAGGACCTATGTGGTGAGGCCAAAGGGAAGGCACCAAGCCACCATTGTGTGGCTTCATGGCCTAGGTGA
    | ||||   |||      |  |  | || |  | |   ||  | |  ||    |  || ||||      | ||      || ||   || || |  |    | |||||||||||||  |  ||  |||||| || || |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||
----tatgtcatgtccgcacgaaggtggtcttgtgaataggatacgttctaatctctaccatttata------ccaataccttatccta--catgaat-gatcaatcattcagGTGGACGAAGCAGTAGGAGAGTCGACTATGGGAGGACATATGTGGTGAGGCCAAAGGGAAGGCACCTAGCCACCATTGTGTGGCTCCATGGCATAGGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatctatatagctgcaaaagaacaattctgagcacgatttaaatggtgattcagGTGGACGGGGTGGTCAGAGAGTTGAGTACGGGAGGACCTATGTGGTGAGGCCAAAGGGAAGGCACCAAGCCACCATTGTGTGGCTTCATGGCCTAGGTGA
                                     atttaaat  TA-rich tract