1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctgatctatttctaataaatgcagcatagtatggaactatagatcaaaaacataattccatgttggtagttcctctaacttattttcatgtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
species | Oryza sativa |
transcript | LOC_Os05g50480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAG ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGEST: gi|8594718|gb|AU093256.1|AU093256
genomic: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAGgtattatagc ... gtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
EST: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAG ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGEST: gi|88311687|gb|CI574904.1|CI574904
genomic: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAGgtattatagc ... gtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
EST: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAG ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
genomic: GGATTGCGGCATGGACCCCGACGTCGCCGTCGAGCGCCTCATCTCGCAAGgtattatagc ... gtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
caaaaacataattccatgttggtagttcctctaacttattttcatgtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
ctctaac putative branch site (score: 24)
tctgttc putative PPT
taacttattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgatctatttctaataaatgcagcatagtatggaactatagatcaaaaacataattccatgttggtagttcctctaacttattttcatgtctgttcagATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
gctgatc
- - - - - - - - - - tgcagca
- - - - - - - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg