1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtattttacctgtccatgccttttcctctttaatttgcacttatggagagcatactctatatttgtcacttaatatattctccttttttgtgtttaacagGTCATCGATGATAAAAGAGTCTAGCCAACCAGATGCGCAGTCATTTATGCTTCCTCAACATTTCAAGGAGCATGAGTCTTCTGTAATTTCCTTCCCTCCA
species | Oryza sativa |
transcript | LOC_Os05g50370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGAGATTGGGGCGGAGGAGATCGCCTCGTCGACTGGGAGCTCCTCCAG GTCATCGATGATAAAAGAGTCTAGCCAACCAGATGCGCAGTCATTTATGCT
genomic: GGGGAGATTGGGGCGGAGGAGATCGCCTCGTCGACTGGGAGCTCCTCCAGgttcgtgcca ... tgtttaacagGTCATCGATGATAAAAGAGTCTAGCCAACCAGATGCGCAGTCATTTATGCT
gagagcatactctatatttgtcacttaatatattctccttttttgtgtttaacagGTCATCGATGATAAAAGAGTCTAGCCAACCAGATGCGCAGTCATTTATGCTTCCTCAACATTTCAAGGAGCATGAGTCTTCTGTAATTTCCTTCCCTCCA
acttaat putative branch site (score: 8)
ttctccttttttgtgt putative PPT
tatatttgtcacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttacctgtccatgccttttcctctttaatttgcacttatggagagcatactctatatttgtcacttaatatattctccttttttgtgtttaacagGTCATCGATGATAAAAGAGTCTAGCCAACCAGATGCGCAGTCATTTATGCTTCCTCAACATTTCAAGGAGCATGAGTCTTCTGTAATTTCCTTCCCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - tccatgc
- - - - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - agcatac