1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggcacaaggtttcgttcccaagaaatatgtcatcaacccgttcataccacctagcattcagtactgttactatagtgaactttaccttcttccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGTGAAGTCATTGGCAAAGGGAGTTATGGTGTTGTGGCTGCCGCTGTCGACA
species | Oryza sativa |
transcript | LOC_Os05g50120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAG GAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGTEST: gi|88390925|gb|CI592833.1|CI592833
genomic: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAGgtggggatgg ... tccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGT
EST: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAG GAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGTEST: gi|88398834|gb|CI601170.1|CI601170
genomic: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAGgtggggatgg ... tccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGT
EST: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCGGAGCAAGAAG GAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTAAGTEST: gi|88313053|gb|CI592337.1|CI592337
genomic: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAGgtggggatgg ... tccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGT
EST: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAG GAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGT
genomic: CGCACCTGCCGGTGCGCACGGAGCCGCGACGCATGGATCCGAGCAAGAAGgtggggatgg ... tccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGT
accacctagcattcagtactgttactatagtgaactttaccttcttccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGTGAAGTCATTGGCAAAGGGAGTTATGGTGTTGTGGCTGCCGCTGTCGACA
ctttaccttcttccat CT-rich tract
ttactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcacaaggtttcgttcccaagaaatatgtcatcaacccgttcataccacctagcattcagtactgttactatagtgaactttaccttcttccattccagGAACCTGACTTCTTCACTGAATATGGTGAAGCAAACCGGTATAAAGTCAGTGAAGTCATTGGCAAAGGGAGTTATGGTGTTGTGGCTGCCGCTGTCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-gcacaag
- - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - -ccgttca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact