Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcagccgggcatctgccccccttttcggctggtggtttgtactgatgatctcgctcactgctgcctgtttgactcggcgcttgcagGGACGGCAGCCATGGCGGCGGCGGCGGCTCGTGGGTCGGGGAGGACGGGCGCGTGTGGCACTCGCACGACGGCCTCGCGCCGCACTCCCACGAGCCCATC

Basic information

species Oryza sativa
transcript LOC_Os05g49050.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g49050.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G413652_T01 (Zea mays), 3'ss of exon 1
--------gtgcgtgcagccgggcatctgcccccct--tttcggctggtggtttgtactgatgatctcgctcactgctgcc----tgtttgactcg--gcgcttgcagGGACGGCAGCCATGGCGGCGGCGGCGGCTCGTGGGTCGGGGAGGACGGGCGCGTGTGGCACTCGCACGACGGCCTCGCGCCGCACTCCCACGAGCCCATC
        | ||||||   ||  | |      ||    | ||||  | || | || ||   |||     | | ||  ||        ||| | | |  |||||| |||||||||| |       |  |  || || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
gtgcgcgcgcgcgtgccatcgctcctagaattccgcgatctcggtcgctg-tctgcacatctgactcgacgcgctcttggtgtggcatttaatttgctgcgctttcagGGACGGCGGTGGCCATGCGGCTGGGGGATCGTGGGTAGGGGAGGACGGACGCGTGTGGCACTCCCACGACGGCCTCGCGCCCCACTCCCACGAGCCCATC