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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g46430.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G394827_T07 (Zea mays), 3'ss of exon 1
ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG------
  |||||||| ||   ||    |   |       |||   ||   | | |  | || |  ||| | || | ||| | ||  |||| | ||| |||| ||||||||| |||||||| || ||||| | |  | |||||||| || |||| | ||||||||||| |||||| |||||||||||||| ||  |||||||||||      
-tcaaatgttccgcattagc--ttgcaacccaaagtc---ttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G088060_T03 (Zea mays), 3'ss of exon 1
------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcc-tgctgatcattagttacaggatcttacagtag---gttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                   ||||  ||  |  |     |       |  ||      ||| ||| || | |   || |  |  | |||| ||| | |   |||| |  ||| |  ||| ||||||||| ||||||||||| ||||| | |  | |||||||| ||||||| | ||||||||||| ||||||||||||||||                     
ttgcttcctcatgcaacaagcaaccgtaactattccccagatggtcaggtgatcagttttctccctgtttaatgtt-gcaagggaatctcacatttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAG---------------------

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G088060_T02 (Zea mays), 3'ss of exon 2
---ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtag---gttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
    | || | || |      ||  |||  |  ||  ||   || | |||| | |   || |  |  | |||| ||| | |   |||| |  ||| |  ||| ||||||||| ||||||||||| ||||| | |  | |||||||| ||||||| | ||||||||||| |||||||||||||||||| || ||  |||||||||||
aaccgtaactattccccag--atggtcaggtg-atcagtt--ttctccctgtttaatgtt-gcaagggaatctcacatttgccagttgatattttcgactatttagGCGAAGGGAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAGTTTGGCAACGGCAATGCCAAG

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G394827_T03 (Zea mays), 3'ss of exon 1
ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG-------------------------------------------
                                             | | |  | || |  ||| | || | ||| | ||  |||| | ||| |||| ||||||||| |||||||| || ||||| | |  | |||||||| || |||| | ||||||||||| |||||| |||||||||||||| ||  |||||||||||                                           
-------------------------------------------cgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagggaaatggcaaccgttccaggggatctgatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAGTTCACCAAGGAGCCGAACAACCTCTACAACATCCACT

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G394827_T02 (Zea mays), 3'ss of exon 1
-----ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
     | |||||||| ||   ||    |   |       |||   ||   | | |  | || |  ||| | || | ||| | ||  |||| | ||| |||| ||||||||| |||||||| || ||||| | |  | |||||||| || |||| | ||||||||||| |||||| |||||||||||||| ||  |||||||||||
actaagtcaaatgttccgcattagc--ttgcaacccaaagtc---ttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttagGCGAAGGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAG

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G394827_T05 (Zea mays), 3'ss of exon 1
-----------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                       | |||||||| ||   ||    |   |       |||   ||   | | |  | || |  ||| | || | ||| | ||  |||| | ||| |||| ||||||||| |||||||| || ||||| | |  | |||||||| || |||| | ||||||||||| |||||| ||||||||||||                  
tctatctgtcttagaaatactaagtcaaatgttccgcattagc--ttgcaacccaaagtc---ttccgcagatagtaatgatatacggaatatcacatttggcagTTGATATTGATTATTTAGGCGAAGGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTC------------------

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT2G19730.2 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggt--tgttggttttggttatgtagGCGAAG-----CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG-
                                                                            | | || ||  | |  |   | | | ||||   ||  | |||       ||||  |   |  | |   |     | |||  | |   |||||||   ||    | ||      ||||||||||| ||||| |  |  |||||||||||||| || ||||| |||||||| ||| |||||||||||||||| |   | ||  | ||| 
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagc-tctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaaggtagGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGG

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT2G19730.3 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggt--tgttggttttggttatgtagGCGAAG-----CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                                             | | || ||  | |  |   | | | ||||   ||  | |||       ||||  |   |  | |   |     | |||  | |   |||||||   ||    | ||      ||||||||||| ||||| |  |  |||||||||||||| || ||||| |||||||| ||| |||||||||||||||| |   | ||  |    
gttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagc-tctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT---

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT2G19730.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggt--tgttggttttggttatgtagGCGAAG-----CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                                                                            | | || ||  | |  |   | | | ||||   ||  | |||       ||||  |   |  | |   |     | |||  | |   |||||||   ||    | ||      ||||||||||| ||||| |  |  |||||||||||||| || ||||| |||||||| ||| |||||||||||||||| |   | ||  |    
gtgagcttagtattactctcaattgttctcagttcagtatgtcttgattttcgtagcttagatgatctgattttgtgtagatattttgattcagcgagc-tctatagtagtagcctttaggaatcgatctgttaatgtatgtgttgttgattggtagtatcatttttggtgtggtgaagGTAGGTATTTGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCT---

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT4G29410.1 (Arabidopsis thaliana), 3'ss of exon 1
------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttt-tcctgctgatcattagttacaggatcttacagtaggttgttggttttggttat--gtagGCGAAG-CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                          | ||| |  |||| |  |  || |  || || ||  |  || |  | | | |  | |  ||     | ||||   | | | |    ||   | ||  ||    ||   ||||||||| || ||||| |  |  |||||||||||||| || ||||  |||||||| ||| |||||||||| ||||| |   | |||||    
gtgagcttgaatcatctctttacaaaccaatttgccgttctt-tgttcttcaatctgtgtagcccttgttttaccgct--tcatatatgttgtgttactaaatgctttcttcttcaataatcagTGAAGGAGCTCGAAATGGCCACAGTTCCAGGACAGTTGATCTGGGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAATGC----

upper sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT4G29410.2 (Arabidopsis thaliana), 3'ss of exon 1
------------------------ggcaaatgttgcgttataataatcatatatatgggtcactttt-tcctgctgatcattagttacaggatcttacagtaggttgttggttttggttat--gtagGCGAAG-CGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG-
                          | ||| |  |||| |  |  || |  || || ||  |  || |  | | | |  | |  ||     | ||||   | | | |    ||   | ||  ||    ||   ||||||||| || ||||| |  |  |||||||||||||| || ||||  |||||||| ||| |||||||||| ||||| |   | ||||||||| 
gtgagcttgaatcatctctttacaaaccaatttgccgttctt-tgttcttcaatctgtgtagcccttgttttaccgct--tcatatatgttgtgttactaaatgctttcttcttcaataatcagtgaagGAGCTCGAAATGGCCACAGTTCCAGGACAGTTGATCTGGGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAATGCCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88732655|gb|CI755832.1|CI755832
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88954777|gb|CI720226.1|CI720226
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|2311591|gb|C27746.1|C27746
EST:     GGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAG-GAANATGGCGACGGTTCCGGAG-CTTTGATCTGGGAGATTGTCA
genomic: GGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAA-ATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCA
EST: gi|87017330|gb|CI301366.1|CI301366
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88387591|gb|CI585294.1|CI585294
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88668824|gb|CI719781.1|CI719781
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|66912719|gb|CX099567.1|CX099567
EST:     AGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: AGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88351558|gb|CI628778.1|CI628778
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|7168830|gb|AU065482.2|AU065482
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAA-NGAATATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAA-ATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCA
EST: gi|88693410|gb|CI736985.1|CI736985
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88671259|gb|CI723179.1|CI723179
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88335297|gb|CI650262.1|CI650262
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88717008|gb|CI740518.1|CI740518
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88669327|gb|CI719465.1|CI719465
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88403125|gb|CI570866.1|CI570866
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTT-CGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|86831708|gb|CI301558.1|CI301558
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88670581|gb|CI724697.1|CI724697
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88729856|gb|CI753077.1|CI753077
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88569753|gb|CI660928.1|CI660928
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88337233|gb|CI629523.1|CI629523
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88765644|gb|CI774738.1|CI774738
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88763296|gb|CI772757.1|CI772757
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|86901100|gb|CI306289.1|CI306289
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|58585765|gb|CF984073.1|CF984073
EST:     GGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: GGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|89173144|gb|CI720974.1|CI720974
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88354676|gb|CI629108.1|CI629108
EST:     ACCCCCACACCGGAGCACACCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88329547|gb|CI648610.1|CI648610
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88336222|gb|CI647416.1|CI647416
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88345220|gb|CI628474.1|CI628474
EST:     CCCCCACACCGGAGCACAGCGAGGCGGCGCCGCCA-CCCCATCTTCTCCG                         GCGAACCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: CCCCCACACCGGAGCACAGCGAGGCGGCGCCG-CAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88570868|gb|CI662241.1|CI662241
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
EST: gi|88337281|gb|CI629571.1|CI629571
EST:     ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCG                         GCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA
genomic: ACCCCCACACCGGAGCACAGCGAGGCGGCGCCGCAGCCCCATCTTCTCCGgtgagtcttc ... ggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG
                     atcttac  putative branch site (score: 3)
         attagtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC