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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgtagataacgggcgggcgcgtggcgcggcgacggtcgagctgtctcgctcgccgccgccgccgccgccatcgtacttttccatccttggtttcacactttttttttcaggtgcgagccgtgagattcttctcctttttttgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGG

Basic information

species Oryza sativa
transcript LOC_Os05g46360.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g46360.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G021406_T01 (Zea mays), 3'ss of exon 1
gtacgcgtagataacgggcgggcgcgtggcgcggcgacggtcgagctgtctcgctcgccgccgccgccgccgccatcgtacttttccatccttggtttcacactttttttttcaggtgcgagccgtgagattcttctcctttttttgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGG
                                     |  ||   || |||  ||    ||    ||    |  |    || |  || || | |  | |   | ||||||  |     |  |||| ||                      | |||||| || ||||| || | || ||||| ||||||||||||||||| ||||||||| |||| || || |||||||   |||||||| ||| |||| ||||
------------------------------------tctttctttctttctttctttgagctcttgct--tggtaggtgacctgaccgtcgtcgtgtccgtgccttttttccc---cccttgccgcgacggc--------------aacgtgcagGTGCGGAGGGGCATCAACCTCGTCTATGGCGGCGGCAGCATCGGTCTGATGGGCGTGATTGCTCGGACGGTTCGTCACGGCGGCTGCCATGTCCTCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58592728|gb|CF991036.1|CF991036
EST:     GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTG                         GTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
genomic: GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtag ... tgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttttttttcaggtgcgagccgtgagattcttctcctttttttgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGG
                              ttcttctccttttttt  CT-rich tract
                                       tttttttgtttttca  TA-rich tract