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...atatcgtacttaatactcctgatttgataatagctatgaagattttgtgtctcctaaagagcacaaaaatgttaatatgcttcgactgggacttaggtagAAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATTGGCAAAACCCTAGGGATTGGGTCATTTGGCAAAGTGAAGATCGCGGAGC
species | Oryza sativa |
transcript | LOC_Os05g45420.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAG AAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATTEST: gi|58690653|gb|CK079340.1|CK079340
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGgtaggagccc ... acttaggtagAAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATT
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGGTAGEST: gi|58675163|gb|CK063850.1|CK063850
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTC----AGgtaggagccc ... acttagg
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAG AAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATTEST: gi|88722948|gb|CI746458.1|CI746458
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGgtaggagccc ... acttaggtagAAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATT
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCAGAGGTCAG AAGATGGAGGGAGCTGGCAGAGATGGGAAACCCTCTTGGCGGTTACCGGATEST: gi|58663248|gb|CK051934.1|CK051934
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGgtaggagccc ... acttaggtagAAGATGGAGGGAGCTGGCAGAGATGGG-AACCCTCTTGGCGGTTACCGGAT
EST: CCGCGGCGCGCCGGAGGTCAGGTAGEST: gi|58680130|gb|CK068817.1|CK068817
genomic: CCGCGGCGCGCCGGAGGTC----AGgtaggagccc ... acttagg
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGGTAGEST: gi|58674603|gb|CK063290.1|CK063290
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTC----AGgtaggagccc ... acttagg
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGGTAGEST: gi|33675614|gb|CF303853.1|CF303853
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTC----AGgtaggagccc ... acttagg
EST: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTCAGGTAG
genomic: TCCTGCTCGCCGCCGCCCCTCCCCCTCGTCCGCGGCGCGCCGGAGGTC----AGgtaggagccc ... acttagg
tgtgtctcctaaagagcacaaaaatgttaatatgcttcgactgggacttaggtagAAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATTGGCAAAACCCTAGGGATTGGGTCATTTGGCAAAGTGAAGATCGCGGAGC
acaaaaatgttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcgtacttaatactcctgatttgataatagctatgaagattttgtgtctcctaaagagcacaaaaatgttaatatgcttcgactgggacttaggtagAAGATGGAGGGAGCTGGCAGAGATGGGAACCCTCTTGGCGGTTACCGGATTGGCAAAACCCTAGGGATTGGGTCATTTGGCAAAGTGAAGATCGCGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -ctcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcttc