1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaatagaatcaaacatgtaaaaatcttaaatccaaatgcattatttttttttgcggggaaaatccaaatgcattgtggtgtgacaaagttgtaactctctttttttgggtttgattttgcgatattgtggtatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGGCGACGATCATGCTCCTCGGCGACACTTGTACCCGTGGTTGTCGATTCT
species | Oryza sativa |
transcript | LOC_Os05g43576.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAG TGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGEST: gi|88364328|gb|CI612277.1|CI612277
genomic: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAGgtaaaataga ... tatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACG
EST: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAG TGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGEST: gi|58682103|gb|CK070790.1|CK070790
genomic: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAGgtaaaataga ... tatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACG
EST: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAG TGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGEST: gi|58659299|gb|CK047979.1|CK047979
genomic: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAGgtaaaataga ... tatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACG
EST: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAG TGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACG
genomic: TCAAGCTCAACACCGTCTGCGTCGAGGCCCAATGCCCCAACATCGGTGAGgtaaaataga ... tatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACG
aagttgtaactctctttttttgggtttgattttgcgatattgtggtatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGGCGACGATCATGCTCCTCGGCGACACTTGTACCCGTGGTTGTCGATTCT
tcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatagaatcaaacatgtaaaaatcttaaatccaaatgcattatttttttttgcggggaaaatccaaatgcattgtggtgtgacaaagttgtaactctctttttttgggtttgattttgcgatattgtggtatatttcagTGTTGGGATGGCGGCGGCGGTGCAGGTGGGGACGGGGACGGCATTGCGACGGCGACGATCATGCTCCTCGGCGACACTTGTACCCGTGGTTGTCGATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC