1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aacttgtgaatattttatttgaattttcattcagtcgtgtgacagatggcaactgggtgtaacgattctgattgagaatatttatctcctcaaatttcagATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGT
species | Oryza sativa |
transcript | LOC_Os05g43570.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCCCGGACGACGCGGCTCCGGCCGGTGGTTTCGCTGTCTGC---G- ATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGA
genomic: GCTTCCCCGGACGACGCGGCTCCGGCCGGTGGTTTCGCTGTCTGCGGTGTgtaaggtttt ... caaatttcagATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGA
atggcaactgggtgtaacgattctgattgagaatatttatctcctcaaatttcagATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGT
ttctgat putative branch site (score: 35)
tttatctcctc putative PPT
attgagaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttgtgaatattttatttgaattttcattcagtcgtgtgacagatggcaactgggtgtaacgattctgattgagaatatttatctcctcaaatttcagATAGAGGCATCGTTCCCAGCATTGGGTTCCACGGAGAATTGCCAATTTGGATATCTGATCCAATTGTTAGTTGGATTGACCGTTTCAGAGTGCCTGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- cttgtga
- - - - - - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg