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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgataaaatgcattatcctctttgttgatatcattgcaatgtaattattctaaatactaattatttttgcattcctttctagTTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAG

Basic information

species Oryza sativa
transcript LOC_Os05g43374.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G307981_T01 (Zea mays), 3'ss of exon 3
gtaggtgataaaatgcattatcctctttgttgatatcattgcaatgtaattattct-aaatactaattatttttgcat--------tcctttctagTTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAG
||| ||||| |   | |||||||  || |   |||| ||    || ||    |  | ||||  | ||  |||| |||         ||||||  ||||| |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||
gtatgtgatta---gtattatccagtt-gcacatataatcatgatatagcagtcttgaaatgttgatacttttggcaactaactaatccttttcagTTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAG

upper sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G173137_T01 (Zea mays), 3'ss of exon 6
gtaggtgataaaatgcattatcctctttgttgatatcattgcaatgtaattattct-aaatactaattatttttgcat--------tcctttctagTTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAG
||| ||||| |   | ||| |||| || |   |||| ||    || ||    |  | ||||  | ||  |||| |||         ||||||  ||||| |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||
gtatgtgatta---gtattttcctgtt-gcacatataatcatgatatagcagtcttgaaatgttgatacttttggcaactaactaatccttttcagTTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcattgcaatgtaattattctaaatactaattatttttgcattcctttctagTTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAG
                           tactaat  putative branch site (score: 1)
                                    tttttgcattcctttc  putative PPT
     attgcaatgtaattat  TA-rich tract