1 5' 3' | 2 5' 3' | 3 5' 3' |
...taattcaggattagtagagacacaagaatttactgaagttctcacagaattcagtagtagttgctaacctcggcaaaacaacttcgtttcgatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCAACTCCAGGGACAAGGTGGATAGTGCCCTGAAGGACATGGCTGTGGTGA
species | Oryza sativa |
transcript | LOC_Os05g43040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAG CTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCEST: gi|88367263|gb|CI564027.1|CI564027
genomic: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAGgtgattgcac ... gatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
EST: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAG CTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCEST: gi|58609523|gb|CK037556.1|CK037556
genomic: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAGgtgattgcac ... gatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
EST: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAG CTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCEST: gi|29663442|gb|CB659717.1|CB659717
genomic: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAGgtgattgcac ... gatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
EST: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAG CTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCEST: gi|33797325|gb|CF324525.1|CF324525
genomic: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAGgtgattgcac ... gatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
EST: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAG CTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
genomic: ACAAGGTGCCCGCAGGGGACAGCCCGTACGTCAGAGCCAAGCACCTGCAGgtgattgcac ... gatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATC
agaattcagtagtagttgctaacctcggcaaaacaacttcgtttcgatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCAACTCCAGGGACAAGGTGGATAGTGCCCTGAAGGACATGGCTGTGGTGA
tgctaac putative branch site (score: 11)
aaaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattcaggattagtagagacacaagaatttactgaagttctcacagaattcagtagtagttgctaacctcggcaaaacaacttcgtttcgatgaatcagCTTGTCGATAAGGATCCGGAGACAGCCATCGTGTGGTTCTGGAAGGCGATCAACTCCAGGGACAAGGTGGATAGTGCCCTGAAGGACATGGCTGTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - cacaaga
- - - - - - - - - - - - - - -ttactga
- - - - - - - - - - - - - - - - - - - - - cacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa