Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatctacatcctctttctttctgattcatctctcttactttttttctggaatttgcttgcgtttgttcgttaaccctagcttctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGTACCAGTTTGAGTTTGTTTGTTCCCAAGTTGGATCCGGCCCTGGGTAATT

Basic information

species Oryza sativa
transcript LOC_Os05g41930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88827653|gb|CI778218.1|CI778218
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58692867|gb|CK081554.1|CK081554
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88388314|gb|CI627853.1|CI627853
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88392855|gb|CI624086.1|CI624086
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58661041|gb|CK049721.1|CK049721
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88352533|gb|CI654358.1|CI654358
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29657473|gb|CB653748.1|CB653748
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29676450|gb|CB672725.1|CB672725
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|33676715|gb|CF304954.1|CF304954
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88733451|gb|CI756628.1|CI756628
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88368923|gb|CI635231.1|CI635231
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88300474|gb|CI587278.1|CI587278
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29667742|gb|CB664017.1|CB664017
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|33654138|gb|CF276752.1|CF276752
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29642636|gb|CB647643.1|CB647643
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88729062|gb|CI752572.1|CI752572
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58589942|gb|CF988250.1|CF988250
EST:     CGGCGATCTCCATCTGGCGAGTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88743482|gb|CI766990.1|CI766990
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAA-TTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58604125|gb|CK014653.1|CK014653
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29642201|gb|CB647208.1|CB647208
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88407259|gb|CI583717.1|CI583717
EST:     CGGCGATATCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATACTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29687867|gb|CB684142.1|CB684142
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88336957|gb|CI627037.1|CI627037
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|163922809|gb|EG712230.1|EG712230
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88571641|gb|CI663014.1|CI663014
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58587617|gb|CF985925.1|CF985925
EST:     CGATCTCCATCTGTGCGACTCGCGTAGCAGAGCAGGGTGAGGGGATCCTG                         ATCTGTGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAG
genomic: CGATCTCCATCTG-GCGACTCGCG-AGCAGAGCAGGG-GAGGGGATCCTGgtgagcatct ... tctcttctagATCTG-GAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAG
EST: gi|58673619|gb|CK062305.1|CK062305
EST:     GGAGGGGAT-CTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: GGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|14192012|gb|AU184223.1|AU184223
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29618261|gb|CB623273.1|CB623273
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|6431594|gb|AU081246.1|AU081246
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88331120|gb|CI639531.1|CI639531
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29671530|gb|CB667805.1|CB667805
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58607184|gb|CK035217.1|CK035217
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCGGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88343412|gb|CI621780.1|CI621780
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58602100|gb|CK012628.1|CK012628
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88571640|gb|CI663013.1|CI663013
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88387778|gb|CI587866.1|CI587866
EST:     CGGCGATCTCCATCTGGCGAATCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58680797|gb|CK069484.1|CK069484
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|33682246|gb|CF310485.1|CF310485
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|33653587|gb|CF276201.1|CF276201
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|2443169|gb|C74940.1|C74940
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58665213|gb|CK053899.1|CK053899
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88395050|gb|CI609366.1|CI609366
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29675860|gb|CB672135.1|CB672135
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29617825|gb|CB622837.1|CB622837
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88456077|gb|CI567717.1|CI567717
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58694679|gb|CK083366.1|CK083366
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|3766749|gb|AU030859.1|AU030859
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|41882547|gb|BX927974.1|BX927974
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58599334|gb|CK009862.1|CK009862
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88325012|gb|CI645027.1|CI645027
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88740697|gb|CI764205.1|CI764205
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58687110|gb|CK075797.1|CK075797
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58597480|gb|CK008008.1|CK008008
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58597927|gb|CK008455.1|CK008455
EST:     GGCGATCGTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: GGCGATC-TCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|2312238|gb|C28393.1|C28393
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58601846|gb|CK012374.1|CK012374
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58605585|gb|CK033618.1|CK033618
EST:     CGGCGATCTCCATCTGGCGACGCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58612400|gb|CK040112.1|CK040112
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88352608|gb|CI624547.1|CI624547
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|428343|gb|D24491.1|D24491
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|29615107|gb|CB620120.1|CB620120
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|33657894|gb|CF280508.1|CF280508
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|3761692|gb|C98940.1|C98940
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88766310|gb|CI775400.1|CI775400
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|58663719|gb|CK052405.1|CK052405
EST:     GGCGATCTCCATCTGGCGACTCGCGAGCAGAGCATGTGAGGGTGAT-CTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAG
genomic: GGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGG-GATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAG
EST: gi|33657477|gb|CF280091.1|CF280091
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
EST: gi|88327163|gb|CI652203.1|CI652203
EST:     CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTG                         ATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT
genomic: CGGCGATCTCCATCTGGCGACTCGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatct ... tctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttttttctggaatttgcttgcgtttgttcgttaaccctagcttctcttctagATCTGGAAGAAGCTCTCCTCTTAATTTCAGCGCCTTAACCTTAATACAAGTACCAGTTTGAGTTTGTTTGTTCCCAAGTTGGATCCGGCCCTGGGTAATT
                               cgttaac  putative branch site (score: 3)
                                     ccctagcttctcttct  CT-rich tract
             aattt  TA-rich tract