1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cgaatttttatgctctttttgtttggtgcaatttgttagtgtttatttttttaaaaaaattctggtagtgagaaggttctttcataaaatgtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAGAGGGGAAAGGCTACGAGTTAAT
species | Oryza sativa |
transcript | LOC_Os05g41120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAEST: gi|88760577|gb|CI770133.1|CI770133
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAA
EST: CACGGTCGTCGCCTTCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTEST: gi|88390725|gb|CI610951.1|CI610951
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTT
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAEST: gi|58659090|gb|CK047770.1|CK047770
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAA
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTACGTCTCCGAGACCC GGTCATATTTATATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAEST: gi|58597057|gb|CK007585.1|CK007585
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAA
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAEST: gi|88447546|gb|CI584550.1|CI584550
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAA
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAEST: gi|86885605|gb|CI311810.1|CI311810
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAA
EST: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCC GGTCATATCTTTATTCAGCAACAGAGACTAAGCT
genomic: CACGGTCGTCGCCTCCGTCGTCATGCTGCTGCTGTTCGTCTCCGAGACCCgtaagtgtgt ... gtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCT
tttttttaaaaaaattctggtagtgagaaggttctttcataaaatgtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAGAGGGGAAAGGCTACGAGTTAAT
tgttttt CT-rich tract
tttcataaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaatttttatgctctttttgtttggtgcaatttgttagtgtttatttttttaaaaaaattctggtagtgagaaggttctttcataaaatgtttttgcagGGTCATATTTTTATTCAGCAACAGAGACTAAGCTAGTGGTTGACACATCAAGAGGGGAAAGGCTACGAGTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -ttatgct
- - - - - - - - - - - -tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataaaa