1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatttttcccccaattttctagatgcctgtactttatgatttgatgaagattggatctgttataatacatactctaatactatgatgaataatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGATTTAACTGGGGATGGAGGTGTTCTTAAGACGGTGGTCAGAAAAGCAAA
species | Oryza sativa |
transcript | LOC_Os05g38370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|87012835|gb|CI297062.1|CI297062
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|58670906|gb|CK059592.1|CK059592
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|88382451|gb|CI633309.1|CI633309
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|58676992|gb|CK065679.1|CK065679
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|38477211|gb|CF961344.1|CF961344
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|88980703|gb|CI022414.1|CI022414
genomic: GCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGEST: gi|88572905|gb|CI664476.1|CI664476
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
gaagattggatctgttataatacatactctaatactatgatgaataatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGATTTAACTGGGGATGGAGGTGTTCTTAAGACGGTGGTCAGAAAAGCAAA
ctctaat putative branch site (score: 3)
tgttataatacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttttcccccaattttctagatgcctgtactttatgatttgatgaagattggatctgttataatacatactctaatactatgatgaataatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAGATTTAACTGGGGATGGAGGTGTTCTTAAGACGGTGGTCAGAAAAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA