1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aataccttcaacacaagatgtaccactgtaccagtacataataataatataataataatgtttttatctctgtgcggctaattccttttttgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAG
species | Oryza sativa |
transcript | LOC_Os05g38150.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACCCGTCCCGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAG GTGGGCACTGCACTTGTCTCCAGACAACATGGAAGATTGGCTTTGGGCAGGEST: gi|86890511|gb|CI303872.1|CI303872
genomic: TCGACCCGTCCCGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAGgtgatttttg ... tgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGG
EST: TCGACCCGTCCCGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAG GTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGGEST: gi|88427440|gb|CI571643.1|CI571643
genomic: TCGACCCGTCCCGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAGgtgatttttg ... tgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGG
EST: TCGACCCGTCACGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAG GTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGG
genomic: TCGACCCGTCCCGGAGCTTCGTGAGGGACGTGAAGCGCGTCATCATCAAGgtgatttttg ... tgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGG
aatataataataatgtttttatctctgtgcggctaattccttttttgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAG
ggctaat putative branch site (score: 3)
ctaattcctttttt CT-rich tract
aataataatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataccttcaacacaagatgtaccactgtaccagtacataataataatataataataatgtttttatctctgtgcggctaattccttttttgcatgacagGTGGGCACTGCAGTTGTCTCCAGACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - caacaca
- - - - - - - - gatgtac
- - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcggc