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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggctggtctgcattatacatttgctgttattatgctcaggttattcatcattatccacaaatatgttttttcttctttgcaaatattctccttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGTAGTAAATGATCTCTACTGGCCTCTGTAGCCAAAGGATTCAGCAAATCT

Basic information

species Oryza sativa
transcript LOC_Os05g37170.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88728836|gb|CI752346.1|CI752346
EST:     TTCTCTCCTCCACCGCCGGCGGCGTTCGGCTCCATCGATCGCACGGCAAG                         AGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
genomic: TTCTCTCCTCCACCGCCGGCGGCGTTCGGCTCCATCGATCGCACGGCAAGgtacggctcc ... cttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
EST: gi|88694995|gb|CI739033.1|CI739033
EST:     TTCTCTCCTCCACCGCCGGCGGCGTTCGGCTCCATCGATCGCACGGCAAG                         AGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
genomic: TTCTCTCCTCCACCGCCGGCGGCGTTCGGCTCCATCGATCGCACGGCAAGgtacggctcc ... cttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattatccacaaatatgttttttcttctttgcaaatattctccttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGTAGTAAATGATCTCTACTGGCCTCTGTAGCCAAAGGATTCAGCAAATCT
                                      tattctccttttccc  CT-rich tract
             aaatatgttttttctt  TA-rich tract