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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g36290.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 1
-------ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
       | |  ||      |  |||    |  ||||  |  ||    |   | | ||| ||   |   ||   ||  ||     | |  ||     |||||| ||||| |  ||| ||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||
taaaccatgagcagaaagtgtattttgattccccgac--caggctgcataactgcatttttctatg---aatgtgtactgaacgctga--actttggtctgttacagAATAGTTGA-GAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G126010_T02 (Zea mays), 3'ss of exon 1
--ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
  | |  ||      |  |||    |  ||||  |  ||    |   | | ||| ||   |   ||   ||  ||     | |  ||     |||||| ||||| |  ||| ||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||
catgagcagaaagtgtattttgattccccgac--caggctgcataactgcatttttctatg---aatgtgtactgaacgctga--actttggtctgttacagaatagTTGA-GAATGGCTGACGAGGATATCCAGCCTATCGTATGTGACAATGGCACTGGAATGGTCAAG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 1
--ttattagtt-tacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGA---CGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
  |  || | | ||  ||   | |     ||  || |  | | |     | |||||| |    || |||  |  |   | ||     |  ||   |  || ||    | | ||  ||||| ||   |||||||||||||||  |||| ||||||||||| |||||||||||||||
cttcgttggctgtaaatgtcctggtttcacgggttgtc-catacaatacaattttgttacttactgacactt--tacttcatggcaccctatgctttctgtagG-TTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA05G32220.2 (Glycine max), 3'ss of exon 1
----ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACG---AGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
     | | | | | ||||||||  |   |    |  ||   | |   ||   |   | |    || |||     | | | ||     |  ||   | ||||||    | | ||  ||||| || |   |||||||||||||  |||| || |||||||| |||||||||||||||
ttagctgtaaatgt-cttggtttcacg-ggttgttcatataatacaatgtttatactttacttactgaca--ctgtatttcatggcaccctatgctttttgcagG-TTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 1
ttattagtttacttggttttgcccagcgacttctagcctt------ctgggtacttttgtcagagcctaacaagtgatgtgta-attatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACG---AGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
       || | |||  | | | ||   |     |||||        |  | |  | | |  |    |  | |   |  |  | ||  | | |  |||   ||||||| | |    |  ||||| || |   | || |||||||||||||| || |||||||| ||||||||||| |||
------attgaattgaatctactcatgaatgaaaagcctggtttgattaagcaagtgttttcggttttctcgatcaagattcagatctttatgt-ttttgattgcagATCGT--AGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 2
--ttatt-agtttacttggttttgcccag----cgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACG---AGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
   |||  ||     |  ||  || || |    |||    |    | |   | |  |||  | |  ||| | || | |  |    || | |     ||  |  |      || | |  |||||||||||   ||||  | || ||  | |||||||||||||| |||||||||||||||
cagtatggagggcgttctgtactgtcctgattgcgagacatgttttacgacgaaaattta-ctgctccttagaactaaaatc---ttctgaaatggttgggcagGTCGGTAT-TAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33685885|gb|CF314124.1|CF314124
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88301002|gb|CI592182.1|CI592182
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33679584|gb|CF307823.1|CF307823
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88314690|gb|CI606758.1|CI606758
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGGAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88313329|gb|CI594959.1|CI594959
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33692460|gb|CF320699.1|CF320699
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88397191|gb|CI593403.1|CI593403
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88345897|gb|CI632370.1|CI632370
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGAAGAGGATATTAAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88694864|gb|CI738902.1|CI738902
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88727147|gb|CI750802.1|CI750802
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33691169|gb|CF319408.1|CF319408
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88317015|gb|CI625652.1|CI625652
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33684049|gb|CF312288.1|CF312288
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33795246|gb|CF323495.1|CF323495
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88723081|gb|CI746591.1|CI746591
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|66923055|gb|CX109903.1|CX109903
EST:     TCCGGAGGAAGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAAGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88312636|gb|CI587544.1|CI587544
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88387045|gb|CI577831.1|CI577831
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|3760405|gb|C97659.1|C97659
EST:     AGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: AGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88359443|gb|CI620974.1|CI620974
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33794076|gb|CF322928.1|CF322928
EST:     GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|58692537|gb|CK081224.1|CK081224
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88694559|gb|CI738597.1|CI738597
EST:     GAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|27547333|gb|CA765360.2|CA765360
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCTTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88353449|gb|CI631634.1|CI631634
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88386829|gb|CI629156.1|CI629156
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|87005057|gb|CI308933.1|CI308933
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33690873|gb|CF319112.1|CF319112
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88353492|gb|CI631677.1|CI631677
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCCTATTGTGTGCGACAA
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACC-TATTGTGTGCGACAA
EST: gi|88388846|gb|CI592734.1|CI592734
EST:     TCCGGAGGAGGAAGCGATCGTTAAACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88426539|gb|CI579368.1|CI579368
EST:     GGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33681940|gb|CF310179.1|CF310179
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33364648|gb|BP432987.1|BP432987
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88720885|gb|CI744184.1|CI744184
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88314807|gb|CI608266.1|CI608266
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88423607|gb|CI579319.1|CI579319
EST:     GGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88316026|gb|CI618902.1|CI618902
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88299885|gb|CI579946.1|CI579946
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88350555|gb|CI630073.1|CI630073
EST:     GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAANCTATTGTGTGCGACAAT
genomic: GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88371570|gb|CI602748.1|CI602748
EST:     GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88423509|gb|CI579221.1|CI579221
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88337615|gb|CI630912.1|CI630912
EST:     CCGGAGGAGGAAGCGATCGTTACACGTACGCCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: CCGGAGGAGGAAGCGATCGTTACACGTACGCC-TCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33684000|gb|CF312239.1|CF312239
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88346851|gb|CI628521.1|CI628521
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88719887|gb|CI741822.1|CI741822
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33822947|gb|CF337279.1|CF337279
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88340775|gb|CI636935.1|CI636935
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|33797083|gb|CF324407.1|CF324407
EST:     GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88730572|gb|CI754185.1|CI754185
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88730342|gb|CI753955.1|CI753955
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88398712|gb|CI598677.1|CI598677
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88288622|gb|CI663411.1|CI663411
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88318195|gb|CI629476.1|CI629476
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88423232|gb|CI613533.1|CI613533
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88353049|gb|CI630227.1|CI630227
EST:     GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: GGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88316651|gb|CI622897.1|CI622897
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88400750|gb|CI616755.1|CI616755
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88313868|gb|CI597499.1|CI597499
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88825475|gb|CI776040.1|CI776040
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88393300|gb|CI618188.1|CI618188
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88356576|gb|CI626191.1|CI626191
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
EST: gi|88400234|gb|CI590924.1|CI590924
EST:     TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAG                         AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT
genomic: TCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 92

CGCTCGCGAGCTCGCGTTACTTTACACCGCCGCCGCCGAGCTCTCCAGACTCCGGAGGAGGAAGCGATCGTTACACGTACGCCTCGTCAAGCAGAAGCAGgtgatcctcc ... tctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG
             gcctaac  putative branch site (score: 92)
                                           tttctgtt  putative PPT
                            tgtaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattagtttacttggttttgcccagcgacttctagccttctgggtacttttgtcagagcctaacaagtgatgtgtaattatcacgcatttctgttgcagAACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - -tgcccag
- - - - - - - - - - - - - - - - - - ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcat