1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatttagtcgttgcgagctatacttggaattggcctattattcgctgttcttagcatatattcgcacgctttctcaccaagattcttttcttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTACCGTGTCAGCGTGATCTGGGACTGTGGCCAATTGTACCATAAGTGGAA
species | Oryza sativa |
transcript | LOC_Os05g36190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|88350121|gb|CI622052.1|CI622052
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|86904548|gb|CI308758.1|CI308758
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|58594200|gb|CF992508.1|CF992508
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATGCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|86821806|gb|CI309259.1|CI309259
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|58611125|gb|CK038837.1|CK038837
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|88308424|gb|CI650833.1|CI650833
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|88326605|gb|CI658323.1|CI658323
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|88423139|gb|CI613440.1|CI613440
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTEST: gi|88377767|gb|CI637901.1|CI637901
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
EST: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTG GTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
genomic: AGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGATCCTGgtgagcatcc ... cttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTT
ctgttcttagcatatattcgcacgctttctcaccaagattcttttcttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTACCGTGTCAGCGTGATCTGGGACTGTGGCCAATTGTACCATAAGTGGAA
ttctcac putative branch site (score: 12)
ttcttttcttctcgc putative PPT
atatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttagtcgttgcgagctatacttggaattggcctattattcgctgttcttagcatatattcgcacgctttctcaccaagattcttttcttctcgcagGTATAGATTGTTGATTGCTTGTGCGTGAACACAACTAAAGCAGTAATTCTTACCGTGTCAGCGTGATCTGGGACTGTGGCCAATTGTACCATAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - tgcgagc
- - - - - - - - - - atacttg
- - - - - - - - - - - - - - - - - - - - - -cgctgtt