1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgcgagcaaccatccccgcttccccttttcctcctccgattcgagatccatggcggggcctctgccgtgcggcacctcaaaccctctccggtcgtactctttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG
species | Oryza sativa |
transcript | LOC_Os05g36070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|29623040|gb|CB628051.1|CB628051
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: GATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|29623889|gb|CB628900.1|CB628900
genomic: GATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|88430334|gb|CI567353.1|CI567353
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CAGGCGAGCAGATCTGAAGGCGCGGCCGGGCGACCTCCTCCCGCCTACCTCEST: gi|88422643|gb|CI571625.1|CI571625
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|88306913|gb|CI639334.1|CI639334
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|58656513|gb|CK045193.1|CK045193
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: ATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGG-CGGCCGACCTCCTCCCGCCTACCTCEST: gi|29623038|gb|CB628049.1|CB628049
genomic: ATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: GATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|88308479|gb|CI650888.1|CI650888
genomic: GATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|88394364|gb|CI603553.1|CI603553
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATACATCCATCCATAAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|88725058|gb|CI748317.1|CI748317
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: ATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCEST: gi|2275797|gb|C24774.1|C24774
genomic: ATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
EST: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAG CCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
genomic: TCGATTGATCCATCCATCCATCAATCGATCGATCGAGCGATCCAACCGAGgtacgcgagc ... ttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTC
gggcctctgccgtgcggcacctcaaaccctctccggtcgtactctttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG
ctctttgtct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgagcaaccatccccgcttccccttttcctcctccgattcgagatccatggcggggcctctgccgtgcggcacctcaaaccctctccggtcgtactctttgtctgcagCCGGCGAGCAGATCTGAAGGCGCGGCCGGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGCGGCCG