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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgagagaactccgagttgtgtggattcgtcggaatatttttttgcgatgtcatcgctaacatcgggaacgctggtcggtcgcgtagGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTGAGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAG

Basic information

species Oryza sativa
transcript LOC_Os05g35730.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35730.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G011169_T01 (Zea mays), 3'ss of exon 1
----------gtgagatgagagaactccgagttgtgtggattcgtcggaatatttttttgcgatgtcatcgct----aacatcgggaacgctggtcggtcgcgtagGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTGAGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAG
          ||| ||||  |  |   |   |        | |   |      | ||  |       || |||     |  |      |  || |   | |||||||||| || ||||||||||| | ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| ||||
gtcggcgggtgtgggatgctatcatgactcatgagacatctgctctgcctccctcttccgaagaaaaattgctttgtgattttccccccaatgttgcattgcgtagGTACCTGACGACGCCGTGGTTAGCGAGTCCTCATTTGCAGACGCTGTTCCTGAGCATATCTGGCAGACCACCTTCATTCACCTATCGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatatttttttgcgatgtcatcgctaacatcgggaacgctggtcggtcgcgtagGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTGAGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAG
                      cgctaac  putative branch site (score: 2)
     ttttttt  TA-rich tract