1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgccggccttatatttttcttggttctcctggtttgcagcctttgggcagcgcctctcgcgttcttttggtttcttgggcgttgttatgaggtcatgtggcgaggaatgtcctaaaggcgccccattttatggccaatctggtgctcttcgtcaacgatgcgctgtaatcattgtttgttcatggtgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAA
species | Oryza sativa |
transcript | LOC_Os05g35570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGAEST: gi|58669203|gb|CK057889.1|CK057889
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGA
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGAEST: gi|58681506|gb|CK070193.1|CK070193
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGA
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGAEST: gi|58670943|gb|CK059629.1|CK059629
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGA
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGAEST: gi|88377219|gb|CI600374.1|CI600374
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGA
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATAACTCTTGGAGCCTCTCTGGTGGGTTGGAATGAEST: gi|88314420|gb|CI604904.1|CI604904
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGA
EST: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAG GTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCT
genomic: TGTCAAGAAGAAGGGGCTCCGCCGCGCCGGCGCCGCCGGCCCCCGCGCAGgtccgccggc ... tgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCT
ggtgctcttcgtcaacgatgcgctgtaatcattgtttgttcatggtgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAA
taatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgccggccttatatttttcttggttctcctggtttgcagcctttgggcagcgcctctcgcgttcttttggtttcttgggcgttgttatgaggtcatgtggcgaggaatgtcctaaaggcgccccattttatggccaatctggtgctcttcgtcaacgatgcgctgtaatcattgtttgttcatggtgaatttcagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG