1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctttatatctatctgtatgagaattttaaggttctgcagacgacccaccgtctgtgggttgtacatgccctaacagacgtgcttgtgatggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG
species | Oryza sativa |
transcript | LOC_Os05g34540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|58687409|gb|CK076096.1|CK076096
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|58685922|gb|CK074609.1|CK074609
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|58695181|gb|CK083868.1|CK083868
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|29674549|gb|CB670824.1|CB670824
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|58653041|gb|CK041721.1|CK041721
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCEST: gi|29644094|gb|CB649101.1|CB649101
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggct ... ggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTC
ccaccgtctgtgggttgtacatgccctaacagacgtgcttgtgatggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG
ccctaac putative branch site (score: 34)
tttttc putative PPT
tttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttatatctatctgtatgagaattttaaggttctgcagacgacccaccgtctgtgggttgtacatgccctaacagacgtgcttgtgatggtttttcagGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -ctgtatg
- - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg