1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cagctgtcctgggctcctggctgtatatattgtttttctactagcagtttaatttttgtgtgctaacactattctctctcttaatatatttctgctgcagGTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGTTGTAGAAGGAAATTGGAGCGGCACAACAAAAGAAGACGAAGAAAACCTGATTCCAAAGGC
species | Oryza sativa |
transcript | LOC_Os05g33810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAA GTTTCATATATTACTAGEST: gi|88572318|gb|CI663889.1|CI663889
genomic: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAAgtaaggctcc ... tctgctgcagGTTTCATATATTACTAG
EST: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAA GTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGEST: gi|29643203|gb|CB648210.1|CB648210
genomic: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAAgtaaggctcc ... tctgctgcagGTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAG
EST: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAA GTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGTTGTAGAAGGAA
genomic: GCTGTCATGCTTGATGGTGTCCAGAAGCGCTATTGCCAGCAGTGTGGCAAgtaaggctcc ... tctgctgcagGTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGTTGTAGAAGGAA
agtttaatttttgtgtgctaacactattctctctcttaatatatttctgctgcagGTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGTTGTAGAAGGAAATTGGAGCGGCACAACAAAAGAAGACGAAGAAAACCTGATTCCAAAGGC
tttctgct CT-rich tract
tctcttaatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagctgtcctgggctcctggctgtatatattgtttttctactagcagtttaatttttgtgtgctaacactattctctctcttaatatatttctgctgcagGTTTCATATATTACTAGATTTCGATGAAGATAAAAGGAGTTGTAGAAGGAAATTGGAGCGGCACAACAAAAGAAGACGAAGAAAACCTGATTCCAAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - tgtcctg
- - - - - - gctcctg
- - - - - - - - - -gctgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc