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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaggactggtttccggggggtgcgcgccccccagatgctcgatgaaatgccagcgcgagtgactcttgcctttctgcttgtgattgtgcagGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCG

Basic information

species Oryza sativa
transcript LOC_Os05g32120.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g32120.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G085042_T01 (Zea mays), 3'ss of exon 1
gtgagaggactggtttccggggggtgcgcgccccccaga-tgctcgatgaaatgccagcgcgagtgactcttgcc----tttctgcttgtgattgtgcagGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCG
                   || ||    | || | || | || |||||||||||    |  |  | ||    ||     |||| |  ||||| |   ||||||||||| |||||||||||||| || || |||||| |||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |
---------------gtaaggaggaaaccaccgctcaaactgttcgatgaaatgtatccatgcctaaccgcggctatcgtttccgtctgtgacta--cagGGGTTCTTCAACTTCACCTCGCGCCGTCCACGGCACCTGCTGCAGATCCTTGAGCTCGGGTACAGCGTCATGTACAACGACGTCGACATGGTGTGGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcgatgaaatgccagcgcgagtgactcttgcctttctgcttgtgattgtgcagGGGTTCTTTAACTTCACCTCGCGGCGGCCGCGGCACTTGCTGCAGATTCTTGAGCTAGGGTACAGTGTCATGTACAACGATGTCGACATGGTGTGGCTCG
     atgaaat  TA-rich tract