Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT

Basic information

species Oryza sativa
transcript LOC_Os05g32110.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G826714_T02 (Zea mays), 3'ss of exon 1
--------tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
          || |     ||  ||     ||| |  | ||| | ||   | |  ||      | || |  | ||||| || | |   |  | | | ||    |||||||||||||||| |||||||||||||||| |||||||| |||||||||||  | |||  ||||||||||||||| ||||| 
tggaacgtaaatagactccatgtattgtgtgaattcattattcatccttctataattgg----gatctgtgttttgatgtgaaccctgtgatcgctctc----tgcagAGGCTTATGATTCGCTGGATCCAAATGGCAACATCACCATAAAATGGGATATCATGCAGTGGACTCCTGATGGATATGTC

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G071970_T01 (Zea mays), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatg-caactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
  | |   | ||  | ||         |  |||| |    |  |    || |  |  |  |||||||  | ||    |     | || || |    ||||||||| || ||| ||||||||||||| || |||||||| |||||||||||  | |||  |||||||||||| || ||||| 
-aacgtaacatagacttcatatattgcgtgaattcattatccatcttctttctataattgggatctttgtttgatgtcaaccctgtgattgctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATATCATGCAGTGGACTCCTGACGGATATGTC

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA13G06660.1 (Glycine max), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
                                  || |||| | ||   | | |   | |  || || || |  |     ||||| | ||  |||| |||| ||||||||| | || |||||||||||||| ||||| || ||||||||  ||||    ||||| |||||||||||||||
---------------------------------gtatccccctctccccttcatatatta--attttaattttaag----tttttctgtttatctttcagaagCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTT

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT5G60920.1 (Arabidopsis thaliana), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaa----ctcttttttgttt--tcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
 |      |  | | ||  |   |  |   |  ||    | ||  |  |  |  |||   |||||  ||||  |||    ||   ||||| |   |||| ||||||| || ||||||||||| |||||| | || ||||| || || |||||||| ||||||   |||||||||||||||||||||
-ctacaaaccaaataattagt--agttttaagattgaagcaatcacaatgtcggtgt---ggatcaggataaacaaagttctgacttttggtaaatccttttgcagAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGCTGGACTCCTGATGGCTATGTT

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactctttt-ttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
||      ||||  ||  ||             |||      | |   |||  || ||| || | |       ||  | |    || | || ||    |||| ||||||||||| || |||||| |||||||||| || |||||||||||  |||||   ||||||  |||||| ||||| 
tctattatcttaaccaattgataggaaaaagtcttaattttgtgtttgttctgtt-ttctggttatgagctcacatgtttgagattatctttctaacacagAAGCTTATGATGCACTTGATCCATATGGAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTG

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaac----tcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
       | ||  | || |  | |     |           || |   || |   |   |||   |  | ||  | |    ||||||  ||||  |  || |||| || |||||||| |||||||| |||||||| |||||||| ||||||||  |||||   |||||||| ||||||||||||
----aatgttttctaatatctctattgtgtgtcagtgaaatatatatatttctcagaaaagggattgaagatttagccttatcttttgggtttctccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATATTATGAGCTGGACTCCAGATGGCTATGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88397002|gb|CI578151.1|CI578151
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58611435|gb|CK039147.1|CK039147
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88372607|gb|CI610930.1|CI610930
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88415064|gb|CI583887.1|CI583887
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88402765|gb|CI613213.1|CI613213
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88694934|gb|CI738972.1|CI738972
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88426252|gb|CI574135.1|CI574135
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|87024030|gb|CI291683.1|CI291683
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|29657169|gb|CB653444.1|CB653444
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88575160|gb|CI669305.1|CI669305
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88312954|gb|CI592238.1|CI592238
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAAC
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAAC
EST: gi|88392225|gb|CI684067.1|CI684067
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88410911|gb|CI578717.1|CI578717
EST:     CGCCGTGCTGATCGCGGCGGCGCTGCTCTTCTCCGCGCCGGACACCAAAG                         AGGCTTATGATGCGCTGGATCAAAATGGAAAAATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88736984|gb|CI760492.1|CI760492
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88694665|gb|CI738703.1|CI738703
EST:     CGCCGTGCTGCTCGCGGNGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|14191720|gb|AU183931.1|AU183931
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88351459|gb|CI627475.1|CI627475
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATTATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88355949|gb|CI653359.1|CI653359
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88336236|gb|CI647430.1|CI647430
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88719340|gb|CI742850.1|CI742850
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|87022718|gb|CI293608.1|CI293608
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88423059|gb|CI613360.1|CI613360
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCAACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCAAGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88827556|gb|CI778121.1|CI778121
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|8858864|gb|AU096182.1|AU096182
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88392831|gb|CI624062.1|CI624062
EST:     GCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGACTAAAATGGGA
genomic: GCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCC-ACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGA-TAAAATGGGA
EST: gi|88744532|gb|CI767892.1|CI767892
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88366460|gb|CI610679.1|CI610679
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88406108|gb|CI593888.1|CI593888
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|572091|gb|D41602.1|D41602
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATAATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|44675812|gb|CR289246.1|CR289246
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88357989|gb|CI650725.1|CI650725
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATC
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATC
EST: gi|58671396|gb|CK060082.1|CK060082
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88409937|gb|CI571194.1|CI571194
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58604910|gb|CK032943.1|CK032943
EST:     GCCGTGCTGCTCGCGGCGGCGCTGCTCTGCGTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: GCCGTGCTGCTCGCGGCGGCGCTGCTCTTC-TCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88743064|gb|CI766572.1|CI766572
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATG
EST: gi|313080016|gb|HO213336.1|HO213336
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58669230|gb|CK057916.1|CK057916
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88363203|gb|CI608146.1|CI608146
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCAAAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58604988|gb|CK033021.1|CK033021
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCAGCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88575186|gb|CI669331.1|CI669331
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88418038|gb|CI596715.1|CI596715
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58669183|gb|CK057869.1|CK057869
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58675359|gb|CK064046.1|CK064046
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88339505|gb|CI635483.1|CI635483
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88573705|gb|CI665474.1|CI665474
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88294411|gb|CI667385.1|CI667385
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58609882|gb|CK037915.1|CK037915
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88740635|gb|CI764143.1|CI764143
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58668528|gb|CK057214.1|CK057214
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88305020|gb|CI580120.1|CI580120
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACGG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88426624|gb|CI579453.1|CI579453
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
                  tcttgat  putative branch site (score: 4)
                               ctcttttttgttttcc  putative PPT
                                  ttttttgtttt  TA-rich tract