Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT

Basic information

species Oryza sativa
transcript LOC_Os05g32110.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G826714_T02 (Zea mays), 3'ss of exon 1
--------tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
          || |     ||  ||     ||| |  | ||| | ||   | |  ||      | || |  | ||||| || | |   |  | | | ||    |||||||||||||||| |||||||||||||||| |||||||| |||||||||||  | |||  ||||||||||||||| ||||| 
tggaacgtaaatagactccatgtattgtgtgaattcattattcatccttctataattgg----gatctgtgttttgatgtgaaccctgtgatcgctctc----tgcagAGGCTTATGATTCGCTGGATCCAAATGGCAACATCACCATAAAATGGGATATCATGCAGTGGACTCCTGATGGATATGTC

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G071970_T01 (Zea mays), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatg-caactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
  | |   | ||  | ||         |  |||| |    |  |    || |  |  |  |||||||  | ||    |     | || || |    ||||||||| || ||| ||||||||||||| || |||||||| |||||||||||  | |||  |||||||||||| || ||||| 
-aacgtaacatagacttcatatattgcgtgaattcattatccatcttctttctataattgggatctttgtttgatgtcaaccctgtgattgctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATATCATGCAGTGGACTCCTGACGGATATGTC

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA13G06660.1 (Glycine max), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
                                  || |||| | ||   | | |   | |  || || || |  |     ||||| | ||  |||| |||| ||||||||| | || |||||||||||||| ||||| || ||||||||  ||||    ||||| |||||||||||||||
---------------------------------gtatccccctctccccttcatatatta--attttaattttaag----tttttctgtttatctttcagaagCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTT

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT5G60920.1 (Arabidopsis thaliana), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaa----ctcttttttgttt--tcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
 |      |  | | ||  |   |  |   |  ||    | ||  |  |  |  |||   |||||  ||||  |||    ||   ||||| |   |||| ||||||| || ||||||||||| |||||| | || ||||| || || |||||||| ||||||   |||||||||||||||||||||
-ctacaaaccaaataattagt--agttttaagattgaagcaatcacaatgtcggtgt---ggatcaggataaacaaagttctgacttttggtaaatccttttgcagAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGCTGGACTCCTGATGGCTATGTT

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactctttt-ttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
||      ||||  ||  ||             |||      | |   |||  || ||| || | |       ||  | |    || | || ||    |||| ||||||||||| || |||||| |||||||||| || |||||||||||  |||||   ||||||  |||||| ||||| 
tctattatcttaaccaattgataggaaaaagtcttaattttgtgtttgttctgtt-ttctggttatgagctcacatgtttgagattatctttctaacacagAAGCTTATGATGCACTTGATCCATATGGAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTG

upper sequence: LOC_Os05g32110.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 3'ss of exon 1
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaac----tcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
       | ||  | || |  | |     |           || |   || |   |   |||   |  | ||  | |    ||||||  ||||  |  || |||| || |||||||| |||||||| |||||||| |||||||| ||||||||  |||||   |||||||| ||||||||||||
----aatgttttctaatatctctattgtgtgtcagtgaaatatatatatttctcagaaaagggattgaagatttagccttatcttttgggtttctccttttcagAAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATATTATGAGCTGGACTCCAGATGGCTATGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88397002|gb|CI578151.1|CI578151
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58611435|gb|CK039147.1|CK039147
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88372607|gb|CI610930.1|CI610930
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88415064|gb|CI583887.1|CI583887
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88402765|gb|CI613213.1|CI613213
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88694934|gb|CI738972.1|CI738972
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88426252|gb|CI574135.1|CI574135
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|87024030|gb|CI291683.1|CI291683
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|29657169|gb|CB653444.1|CB653444
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88575160|gb|CI669305.1|CI669305
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88312954|gb|CI592238.1|CI592238
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAAC
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAAC
EST: gi|88392225|gb|CI684067.1|CI684067
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88410911|gb|CI578717.1|CI578717
EST:     CGCCGTGCTGATCGCGGCGGCGCTGCTCTTCTCCGCGCCGGACACCAAAG                         AGGCTTATGATGCGCTGGATCAAAATGGAAAAATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88736984|gb|CI760492.1|CI760492
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88694665|gb|CI738703.1|CI738703
EST:     CGCCGTGCTGCTCGCGGNGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|14191720|gb|AU183931.1|AU183931
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88351459|gb|CI627475.1|CI627475
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATTATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88355949|gb|CI653359.1|CI653359
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88336236|gb|CI647430.1|CI647430
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88719340|gb|CI742850.1|CI742850
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|87022718|gb|CI293608.1|CI293608
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88423059|gb|CI613360.1|CI613360
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCAACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCAAGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88827556|gb|CI778121.1|CI778121
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|8858864|gb|AU096182.1|AU096182
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88392831|gb|CI624062.1|CI624062
EST:     GCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGACTAAAATGGGA
genomic: GCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCC-ACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGA-TAAAATGGGA
EST: gi|88744532|gb|CI767892.1|CI767892
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88366460|gb|CI610679.1|CI610679
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88406108|gb|CI593888.1|CI593888
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|572091|gb|D41602.1|D41602
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATAATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|44675812|gb|CR289246.1|CR289246
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88357989|gb|CI650725.1|CI650725
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATC
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATC
EST: gi|58671396|gb|CK060082.1|CK060082
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88409937|gb|CI571194.1|CI571194
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58604910|gb|CK032943.1|CK032943
EST:     GCCGTGCTGCTCGCGGCGGCGCTGCTCTGCGTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: GCCGTGCTGCTCGCGGCGGCGCTGCTCTTC-TCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88743064|gb|CI766572.1|CI766572
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATG
EST: gi|313080016|gb|HO213336.1|HO213336
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58669230|gb|CK057916.1|CK057916
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88363203|gb|CI608146.1|CI608146
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCAAAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58604988|gb|CK033021.1|CK033021
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCAGCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88575186|gb|CI669331.1|CI669331
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88418038|gb|CI596715.1|CI596715
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58669183|gb|CK057869.1|CK057869
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58675359|gb|CK064046.1|CK064046
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88339505|gb|CI635483.1|CI635483
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88573705|gb|CI665474.1|CI665474
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88294411|gb|CI667385.1|CI667385
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58609882|gb|CK037915.1|CK037915
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88740635|gb|CI764143.1|CI764143
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|58668528|gb|CK057214.1|CK057214
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88305020|gb|CI580120.1|CI580120
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACGG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
EST: gi|88426624|gb|CI579453.1|CI579453
EST:     CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAG                         AGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG
genomic: CGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 76

GCGGTGGGGGGAGCCGGGAGCTCCAGATCCGTGGCGCCGTGCTGCTGCTGCGCCGTGCTGCTCGCGGCGGCGCTGCTCTTCTCCGCGCCGGCCACCACAGgtttccccgg ... cctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT
                  tcttgat  putative branch site (score: 76)
                               ctcttttttgttttcc  putative PPT
                                  ttttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagAGGCTTATGATGCGCTGGATCCAAATGGAAACATCACGATAAAATGGGACGTTATGTCGTGGACTCCTGATGGCTATGTT

- -tggggct
- - - - - - - catctgc
- - - - - - - - - - - -aactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgca