Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagttctacatgcatgcacaagttgattcatcttgatctgttcatcttcatgatgcgaggtttgatgggtttgcgtgttaatttgcttcatatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG

Basic information

species Oryza sativa
transcript LOC_Os05g29974.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88342813|gb|CI640146.1|CI640146
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|58665334|gb|CK054020.1|CK054020
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|88356078|gb|CI627526.1|CI627526
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|88368238|gb|CI575120.1|CI575120
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|88760430|gb|CI769986.1|CI769986
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|29656345|gb|CB652620.1|CB652620
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: gi|88743266|gb|CI766774.1|CI766774
EST:     GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG                         GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcatgatgcgaggtttgatgggtttgcgtgttaatttgcttcatatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG
                               tgttaat  putative branch site (score: 3)
                                          ttcatatatt  TA-rich tract