1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaggattcgcgcgtctcctcctcctcgcgttctcgccttcgattcgggccgtctcgtgcgtttcccttcgcgttctctgatttttttccggtttttggcgctctcgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA
species | Oryza sativa |
transcript | LOC_Os05g28280.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCG ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCEST: gi|58652702|gb|CK041382.1|CK041382
genomic: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGgtgaggattc ... cgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
EST: -CACCGCCACCGGC-GGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCG ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGAACTCTCCTCCEST: gi|42414329|gb|CK664969.1|CK664969
genomic: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGgtgaggattc ... cgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
EST: TCACCGTCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCG ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCEST: gi|58605226|gb|CK033259.1|CK033259
genomic: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGgtgaggattc ... cgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
EST: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCG ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCEST: gi|88721304|gb|CI744603.1|CI744603
genomic: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGgtgaggattc ... cgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
EST: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCG ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
genomic: CCACCGCCACCGCCACGTCCAGCCTCCGGTCGCCTGTTCGGATCGAAGCGgtgaggattc ... cgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCC
gtttcccttcgcgttctctgatttttttccggtttttggcgctctcgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA
ctctgat putative branch site (score: 17)
ctctcgtttt putative PPT
tgattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggattcgcgcgtctcctcctcctcgcgttctcgccttcgattcgggccgtctcgtgcgtttcccttcgcgttctctgatttttttccggtttttggcgctctcgttttgcagATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC