1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agcgcatattgtatatgtagccacatgcccatgcattgcaagggaattctcaaacccatctatagttgagtttttgtaactgtacgtcctgaaatttcagATGGGAATGCATAGCAAAGGAATGGGTGCAGAGTTGGAAGTGAGATGGCAAAGATGGGTAATTTTAGTAAAAAAAATGTGTGAACTCACCATTACGGATG
species | Oryza sativa |
transcript | LOC_Os05g28180.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGACAATCTTATCCAAG ATGGGAATGCATAGCAAAGGAATGGGTGCAGAGTTGGAAGTGAGATGGCAA
genomic: AGGACAATCTTATCCAAGgtatcgcttg ... gaaatttcagATGGGAATGCATAGCAAAGGAATGGGTGCAGAGTTGGAAGTGAGATGGCAA
attctcaaacccatctatagttgagtttttgtaactgtacgtcctgaaatttcagATGGGAATGCATAGCAAAGGAATGGGTGCAGAGTTGGAAGTGAGATGGCAAAGATGGGTAATTTTAGTAAAAAAAATGTGTGAACTCACCATTACGGATG
ttgtaac putative branch site (score: 2)
tttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgcatattgtatatgtagccacatgcccatgcattgcaagggaattctcaaacccatctatagttgagtttttgtaactgtacgtcctgaaatttcagATGGGAATGCATAGCAAAGGAATGGGTGCAGAGTTGGAAGTGAGATGGCAAAGATGGGTAATTTTAGTAAAAAAAATGTGTGAACTCACCATTACGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - atatgta
- - - - - - - - - - -cacatgc
- - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - tgcaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtacg