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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagagttaatttattgcgatttcgttgctctcagatatctactctattcgttacaacaaagatattttcagtaatgcctttgtattaactgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC

Basic information

species Oryza sativa
transcript LOC_Os05g25850.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88335393|gb|CI650358.1|CI650358
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAAGGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGNGAGG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
EST: gi|88578004|gb|CI674629.1|CI674629
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAA
EST: gi|95100584|gb|CI692284.1|CI692284
EST:     AGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTC
EST: gi|88355464|gb|CI679182.1|CI679182
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88329873|gb|CI651547.1|CI651547
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGC
EST: gi|88332630|gb|CI651790.1|CI651790
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GGCATGTCAATCATTCGATCTTCTGGAATAAC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAAC
EST: gi|88341465|gb|CI635663.1|CI635663
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAA
EST: gi|88332022|gb|CI642247.1|CI642247
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTC
EST: gi|88307756|gb|CI644796.1|CI644796
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAAT
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAAT
EST: gi|88741668|gb|CI765176.1|CI765176
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GGCATGTCAATC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATC
EST: gi|1632331|gb|C20060.1|C20060
EST:     GGTCCCCGCCATCGTGCACCTNCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTNAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88351405|gb|CI627421.1|CI627421
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGGGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGACTATCAGGCGAG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAG-CGAG
EST: gi|88737537|gb|CI759418.1|CI759418
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGNGGAG                         GCCATGTCAATCAT
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCAT
EST: gi|88739496|gb|CI763004.1|CI763004
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGA
EST: gi|88378960|gb|CI681785.1|CI681785
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88335378|gb|CI650343.1|CI650343
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
EST: gi|88302376|gb|CI668222.1|CI668222
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
EST: gi|88736073|gb|CI759581.1|CI759581
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGA
EST: gi|88741772|gb|CI765280.1|CI765280
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTC
EST: gi|88577605|gb|CI674203.1|CI674203
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTNTGGAATAACCTCAAGCCTATCAG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAG
EST: gi|88341466|gb|CI635664.1|CI635664
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGNGGAG                         GCCATGTCAATCATTCGATCTTCTGG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGG
EST: gi|88364015|gb|CI610359.1|CI610359
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88760673|gb|CI770229.1|CI770229
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATACCCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88360685|gb|CI647695.1|CI647695
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAG
EST: gi|88356387|gb|CI652824.1|CI652824
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTA
EST: gi|88569449|gb|CI660624.1|CI660624
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGGGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88572347|gb|CI663918.1|CI663918
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAG
EST: gi|88570376|gb|CI661749.1|CI661749
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGG
EST: gi|88334258|gb|CI642503.1|CI642503
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGGGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAAC-TCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
EST: gi|88369900|gb|CI680578.1|CI680578
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGNGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGA
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGA
EST: gi|88332005|gb|CI642230.1|CI642230
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAAC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAAC
EST: gi|88573928|gb|CI665697.1|CI665697
EST:     CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAG                         GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
genomic: CGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaa ... tgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcgttacaacaaagatattttcagtaatgcctttgtattaactgtgctgcagGCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC
                                      tattaac  putative branch site (score: 1)
          aacaaagatatttt  TA-rich tract