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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgtccttctccttctacactcccttctctccatccagatctaacgtgaagagggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCCGACAAGGCGCGGGCGGAGACGACGGAGGGAGCGTCGTACAAGTGGCGTA

Basic information

species Oryza sativa
transcript LOC_Os05g19954.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88570006|gb|CI661181.1|CI661181
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88330039|gb|CI652429.1|CI652429
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88288671|gb|CI663460.1|CI663460
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88688309|gb|CI731885.1|CI731885
EST:     GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88717775|gb|CI741285.1|CI741285
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88693267|gb|CI736842.1|CI736842
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88691366|gb|CI733949.1|CI733949
EST:     GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88316614|gb|CI622860.1|CI622860
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88689634|gb|CI733210.1|CI733210
EST:     GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|33807142|gb|CF329453.1|CF329453
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88393631|gb|CI619923.1|CI619923
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88689372|gb|CI732948.1|CI732948
EST:     GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88691736|gb|CI733814.1|CI733814
EST:     GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
EST: gi|88332716|gb|CI660234.1|CI660234
EST:     GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCG                         CTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC
genomic: GCGGCGCCGCCGCCGTTTCCGCCGCCGCTATCGGCGGACATAGTATCTCGgtaaagtgtc ... agggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctccttctacactcccttctctccatccagatctaacgtgaagagggtctcagCTCGGGGATGGCTGCCATTGCGCGGTGCCGCCGCCGGGGGAGAAGGACGCCGACAAGGCGCGGGCGGAGACGACGGAGGGAGCGTCGTACAAGTGGCGTA
                                atctaac  putative branch site (score: 2)