1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttggaattacattaataagatttttgagtttcaacctactaaatttgaagtactggtactgatagtgctgttgtttgaactgagcaaaaagcacttgcagACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAG
species | Oryza sativa |
transcript | LOC_Os05g15360.7 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGCCACTCCTCGCCGCCATTCTCGTGTCCACCGCCAAGAGCTGCTCCG ACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAEST: gi|88489215|gb|CI426487.1|CI426487
genomic: CGAGCCACTCCTCGCCGCCATTCTCGTGTCCACCGCCAAGAGCTGCTCCGgtaaaaagct ... gcacttgcagACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAA
EST: CGAGCCACTCCTCGCCGCCATTCTCGTGTCCACCGCCAAGAGCTGCTCCG ACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAA
genomic: CGAGCCACTCCTCGCCGCCATTCTCGTGTCCACCGCCAAGAGCTGCTCCGgtaaaaagct ... gcacttgcagACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAA
tgaagtactggtactgatagtgctgttgtttgaactgagcaaaaagcacttgcagACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAG
tactgat putative branch site (score: 2)
aaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaattacattaataagatttttgagtttcaacctactaaatttgaagtactggtactgatagtgctgttgtttgaactgagcaaaaagcacttgcagACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa