1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcaaccatgccttcctagattttagttttcttgcagtgctttcgtagttttagttgctctttttctgatagaccatgacatgcttttatcattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG
species | Oryza sativa |
transcript | LOC_Os05g07690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAG AGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGEST: gi|58683882|gb|CK072569.1|CK072569
genomic: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAGgtagattcct ... cattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATG
EST: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAG AGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGEST: gi|86596652|gb|CI286565.1|CI286565
genomic: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAGgtagattcct ... cattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATG
EST: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAG AGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGEST: gi|33814147|gb|CF332955.1|CF332955
genomic: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAGgtagattcct ... cattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATG
EST: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAG AGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATG
genomic: TCGATCCACGCCCCGCCCGCTCGCTCGCTCGCTCGCTCTGTGAGCCCAAGgtagattcct ... cattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATG
tagttttagttgctctttttctgatagaccatgacatgcttttatcattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG
ttctgat putative branch site (score: 57)
cttttatc putative PPT
ttttatcattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaccatgccttcctagattttagttttcttgcagtgctttcgtagttttagttgctctttttctgatagaccatgacatgcttttatcattgtttagAGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG
- - - catgcct
- - - - - - - - - - - - - - -tcttgca
- - - - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacatgc