1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcttgcccttctttttctagtttaaaacttcatgtttacagtccatttgcagctgcaatagatttgctggaaaactaatagagcaacttgttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAAT
species | Oryza sativa |
transcript | LOC_Os05g07070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88390395|gb|CI607431.1|CI607431
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88694807|gb|CI738845.1|CI738845
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88343239|gb|CI627199.1|CI627199
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGGGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGGCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88590237|gb|CI709075.1|CI709075
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: CGGCGGGGGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88583908|gb|CI700408.1|CI700408
genomic: CGGC-GGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|58673534|gb|CK062220.1|CK062220
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88727776|gb|CI749578.1|CI749578
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTAEST: gi|88406229|gb|CI594009.1|CI594009
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
EST: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAG ATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
genomic: GCGGCGGCGGAGAGGACGAGCCGTCTACTGGATCGGCCGCCCACGAGGAGgtattgcccc ... gttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTA
atttgcagctgcaatagatttgctggaaaactaatagagcaacttgttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAAT
aactaat putative branch site (score: 2)
cttgttttccc putative PPT
aaaactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgcccttctttttctagtttaaaacttcatgtttacagtccatttgcagctgcaatagatttgctggaaaactaatagagcaacttgttttcccagATTAAGCCAAGTTTGATCAGATTGTTCACGTGTTATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA