1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaggacaacttgtgccaattctgcttttcatttcagatctggttgtaatctgaagagacaataatctgacaccatatgaatgctgtttgtttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTCTTCAAG
species | Oryza sativa |
transcript | LOC_Os05g06700.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGATCGATGGATCGACCCCAG GTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTCEST: gi|88577787|gb|CI674397.1|CI674397
genomic: AGGGATCGATGGATCGACCCCAGgtgatgcccc ... tttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTC
EST: AGGGATCGATGGATCGACCCCAG GTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTCEST: gi|88402439|gb|CI596300.1|CI596300
genomic: AGGGATCGATGGATCGACCCCAGgtgatgcccc ... tttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTC
EST: AGGGATCGATGGATCGACCCCAG GTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTC
genomic: AGGGATCGATGGATCGACCCCAGgtgatgcccc ... tttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTC
gtaatctgaagagacaataatctgacaccatatgaatgctgtttgtttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTCTTCAAG
atctgac putative branch site (score: 19)
tttgtttc putative PPT
acaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggacaacttgtgccaattctgcttttcatttcagatctggttgtaatctgaagagacaataatctgacaccatatgaatgctgtttgtttgtttcagGTAGTTACCGAGAACTATGCCAATCCTGTGACGTGCCTCTTTCATGTGCTCTTCAAG
- - - - -cttgtgc
- - - - - - - - - -ttctgct
- - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - -ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc