1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taattgaacaaaggattttttttctcatactaaaaaaattcttttgtcatactaaaagaactagtctgattctgatccattttgtctttttatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGGTTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTG
species | Oryza sativa |
transcript | LOC_Os05g05160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88299036|gb|CI568039.1|CI568039
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88741673|gb|CI765181.1|CI765181
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88401530|gb|CI588471.1|CI588471
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88337473|gb|CI630770.1|CI630770
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88721618|gb|CI744917.1|CI744917
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88400520|gb|CI593595.1|CI593595
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88386958|gb|CI629285.1|CI629285
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88851544|gb|CI670984.1|CI670984
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88383890|gb|CI631780.1|CI631780
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88572678|gb|CI664249.1|CI664249
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACEST: gi|88346996|gb|CI628666.1|CI628666
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTAC
EST: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCG ACACCTTCTGACATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGCTA
genomic: TTTGCTAGCGGCTGTGTGGTCGGAGCTCGTCTTCTTGGTTCGAGATCTCGgtgagttgaa ... tatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGG-TA
gtcatactaaaagaactagtctgattctgatccattttgtctttttatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGGTTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTG
tccattttgtcttttt CT-rich tract
attttgtctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattgaacaaaggattttttttctcatactaaaaaaattcttttgtcatactaaaagaactagtctgattctgatccattttgtctttttatgattcagACACCTTCTGAGATGGATTTTTTCACCGAGTACGGTGAGGGAAACAGGTACAAGATAGAAGAGGTTATAGGAAAAGGGAGTTATGGTGTGGTTTGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - -gaacaaa
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc