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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcccaatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

Basic information

species Oryza sativa
transcript LOC_Os05g01560.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
----------gtaagctcccaatcttccccttcactttctcgg-----ggccagatctgatctgagatgaggttgacaca------cgacgcatgca-agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
           | || || |  ||   |||||| || ||||        ||| ||||  | |    ||        | ||      || |   |||  ||||||||||||||||||||| || |||||||||||||| ||||| || |||||||| || |||||||| || || || |||||||||||||||||||||||
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------------------------------------------------------------gtaagctcccaatcttccccttcactttct-cggggccagatctgatctgagatgaggttgacacacg--acgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                                                                                              || ||     |      ||||  || || | |    | |  |||| |    || || ||    |    | |  ||  ||| ||||| || || || || || || ||||| || ||||| |||||||| ||||| |||||| | ||||| |||||||||||||| ||||| || || ||
gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataataatattagggtctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
-----------------gtaagctcccaatcttccccttcac-tttctcggggccag----atctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                   || |    | | ||     || | |||| ||   ||       | | |||| | |    || | |          |   ||| |||||||| || ||||||||||| ||||||||||| || || ||||| ||||| |||||| | ||||| ||||||||||| || ||||| || || ||
gtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgt-gtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
-----------------gtaagctccc-aatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacg-----acgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                  | | |   | ||||||   |||    || |  |     |||   ||||| || ||  || |           ||   ||  ||| ||||| || ||||| ||||| || ||||| || ||||||||||| |||||||| |||||| | || || |||||||||||||| || ||||| || ||
cactcatgtgaaagtgattgatcgatcgaatcttaatcttagggttgtttgaagt-gataaaatctgtgaggaatttcatttgtatttgaactgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
--------------gtaagctcccaatcttccccttcactttctcggggccag--atctgatctgagatgaggttgacacacgacgcat------gcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
              | |||      |||   |   |     |||  |||       | |||  ||| |  |  |||  |        ||      |  ||| ||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| || ||| | || || |||||||||||||| || || || || ||
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------------------------------gtaagctcccaatcttcc-ccttcactttctcggggccagatctgatctgagatgaggttgacac----acgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                                                                                          | || ||  |  |  ||   |||   |           | || |||| |     | ||     |     |  | |  ||  ||| ||||| || || ||||| || || ||||| || ||||| |||||||| ||||| |||||| | ||||| |||||||||||||| ||||| || || ||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
------------------gtaagctcccaatcttccccttcactttctcggggcc---agatctga-tctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                     |  | |  | ||||  |   |  ||  |     |   |||| |   | | | ||||  |      ||       | |||| ||||| || ||||| ||||| || ||||| |||||||||||||| || ||||| |||||| | ||||| |||||||||||||| || ||||| || ||
tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgcattttctgtagatttatctttaatatgaattgtttgaactgatggaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
-----------------gtaagctcccaatcttccccttcactttctcggggccagatctgatctg-agatgaggttgacacac-----gacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                 | |||      |  |||       |||  |  |      || |  |||| ||||     |   | ||     || | ||| |||| ||||| || ||||| ||||| || ||||| ||||| |||||||| || ||||| |||||| | || || |||||||||||||| || ||||| || ||
ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcattttttctgtagatttatctttaatactaattgatggatg-aagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
--------------------gtaagctcccaatcttccccttcactttctcggggccag----atctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                       || |     | ||    ||    ||  ||   || |     | | |||||| |    || | |          |   ||| ||||| || || ||||| ||||| ||||||||||| || || ||||| ||||| |||||| | ||||| ||||||||||| || ||||| || || ||
gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgt-gtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
-----gtaagctcccaatcttccccttcactttctcgg-ggccagatct---------gatctgagatga-ggttgacacacgac------gcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
      |||  ||     ||||  ||||| ||||||     || ||  |         |||||  |||   | |||||    |           |   ||| ||||| || || || || || || ||||| ||||| || |||||||| ||||| |||||| | ||||| |||||||||||||| || || || || ||
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
-------------------gtaagctcccaatcttccccttcactttctcggggcca---gatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                   |||   |||||        ||      | | |   | |   |  ||  | |      | |||   |   |   | |   |||||||||||| ||||| || || || |||||||| ||||| ||||| |||||||| |||||||| ||||| || || ||||| || || ||||| || ||
tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
---------------------------------------------------------------------------------------------------------gtaagctcccaatcttccccttcactttctcggggc-cagatctgatctgagatgaggttgacacacgacgcatgca------------agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                                                                                            |||   |||  |   |  | | |    | |    |  |||        | ||||  || | | |  ||||  |             ||||||||||||||| || ||||| ||||||   ||||||||| | || |||||||| || |||||||| || ||||| ||||||  ||| || ||||| ||
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------gtaagctcccaatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                   |  ||    |||| |    | || ||         |    ||   ||  ||||  |||| | ||            ||||||||||| ||||| || || ||||| || || || || ||||| || ||||| || ||||| || || || |||||||||||||||||||| || ||
gccaccactgtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttgtacagttgtgaaaccgcgttccttgactacgatgttgttggcgca------------gGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
----------gtaagctcccaatcttccccttc------actttctcggg---gccagatctgatctgagatg--aggttgacacacgacgcatgca-agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
          ||      || |||||    ||       |||||     |   ||  | |||   | || |||  |    ||            ||  |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||| || || ||
aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatcagcttgctcgctctttaccgatatgttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gtaagctcccaatcttccccttcactttc-----tcggggccagatct-gatctgagatgaggttgacaca-cgacgcatg--------caagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
         ||| |    | | | |  || | |||      | || ||  ||| | || ||     ||   ||||| | ||  |  ||          |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || ||  |||||||||| || ||||| || || ||
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
------------gtaagctcccaatcttccccttcactttctcggggccagatctga---tctgagatgaggttgacac----acgacgcatgca---agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
             |  || ||| |  |||   | |    ||| ||     |    ||   ||  ||||  |  | | |     | |     |||    |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||| || || ||
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------gtaagctcccaatcttccccttcactttctcggggccagatctga-----tctgagatgaggttgacacacgacgc----atgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
              |  || |  || ||||   |||     || |||  |   |  ||        || ||||  |  |      | |       |  |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||| || || ||
cccgtgaacggtgttgggcacttaagcttcaatttcctcagctagggtgcgacttcgaaactcctggacatgaactaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gtaagctcccaatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
|||||   |||   |     | | ||||          ||||| ||| |  ||| | | ||    | |   ||   ||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| || ||| | ||||| || |||||||| || |||||||| || ||
gtaag---ccagattctttttcctcttt----------gatctaatc-gcaatgcgatggat---caatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------------------------------------------------------gtaagctcccaatcttcccc--ttcactttctcggggccagatct---gatctgaga---tgaggttgacacacgacgcatgca----agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                                                                               |    || |  || | | |  ||  ||| |      || ||| |   ||||  | |        ||  | || |     | |     ||||||||| || ||||| || ||||| ||||| || || || |||||||||||||| |||||||| ||||| || |||||||| || ||||| || || ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55411092|gb|CV723468.1|CV723468
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|86902609|gb|CI306412.1|CI306412
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88570021|gb|CI661196.1|CI661196
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGNACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|38473664|gb|CF957796.1|CF957796
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTAGGCGTCC
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGT-GGCGTCC
EST: gi|88570202|gb|CI661377.1|CI661377
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88571848|gb|CI663221.1|CI663221
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88333933|gb|CI645347.1|CI645347
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|29686032|gb|CB682307.1|CB682307
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGGATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGGGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|163929140|gb|EG713037.1|EG713037
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|25799453|gb|CA755414.1|CA755414
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCNAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|86601472|gb|CI253800.1|CI253800
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88954860|gb|CI720259.1|CI720259
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88578762|gb|CI687712.1|CI687712
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|38474557|gb|CF958690.1|CF958690
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCGGGT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88324867|gb|CI644876.1|CI644876
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|38472201|gb|CF956332.1|CF956332
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88340729|gb|CI657221.1|CI657221
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88574919|gb|CI666688.1|CI666688
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTTCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGGCC-AGAGCGGCGTGGGCGTGGCGTCC
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACC-GCCAAGAGCGGCGTGGGCGTGGCGTCC
EST: gi|55414940|gb|CV727316.1|CV727316
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|25797421|gb|CA753382.1|CA753382
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88339172|gb|CI633743.1|CI633743
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|88579226|gb|CI688205.1|CI688205
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|33660491|gb|CF291458.1|CF291458
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCTTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|163921076|gb|EG710139.1|EG710139
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
EST: gi|87004588|gb|CI300910.1|CI300910
EST:     CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCT                         GCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctccc ... cgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT
                                ggttgac  putative branch site (score: 4)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctcccaatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGCCGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCACCG