1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactagtaataaacaaaccagaaaaccatcctgcctgccactgatttctttttattctgcaagactgtagcacctcaattattttcccttccatgcttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
species | Oryza sativa |
transcript | LOC_Os05g01240.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAG AGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAGEST: gi|88389581|gb|CI603080.1|CI603080
genomic: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAGgtactagtaa ... ttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
EST: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAG AGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAGEST: gi|88694140|gb|CI738178.1|CI738178
genomic: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAGgtactagtaa ... ttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
EST: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAG AGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
genomic: CAGACGACTCCTCATCTTCATTCTTCTCTCAGGACCTTGTCCCTACAGAGgtactagtaa ... ttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
ttattctgcaagactgtagcacctcaattattttcccttccatgcttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
ttattttcccttccat CT-rich tract
tcaattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagtaataaacaaaccagaaaaccatcctgcctgccactgatttctttttattctgcaagactgtagcacctcaattattttcccttccatgcttcattgcagAGGCAAGTTGGATTTTGGAATTCAGAGTCAATGGTGGATCACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA