Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgtagttgctctcctctaatccctaacccttgaggggcacacatcttctctctttcttttgggtgtcctgttgctaatctctcctgtccttgtgcagGAAGTTGATGAAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAACCACAAAAACAGGAATCCCAAAGTGACCCAAGGCAGGAAAAAAAAAAGGG

Basic information

species Oryza sativa
transcript LOC_Os05g01240.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678623|gb|CB674898.1|CB674898
EST:     CCCTTTCCACCTCCTGCAACCTCTTCATTTCTTTGCTGCTGCTGCTTCAG                         GAAGTTGATGAAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAAC
genomic: CCCTTTCCACCTCCTGCAACCTCTTCATTTCTTTGCTGCTGCTGCTTCAGgtgagctgag ... ccttgtgcagGAAGTTGATGAAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAAC
EST: gi|29625694|gb|CB630705.1|CB630705
EST:     CCCTTTCCACCTCCTGCAACCTCTTCATTTCTTTGCTGCTGCTGCTTCAG                         GAAGTTGATGAAAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAA
genomic: CCCTTTCCACCTCCTGCAACCTCTTCATTTCTTTGCTGCTGCTGCTTCAGgtgagctgag ... ccttgtgcagGAAGTTGATG-AAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttctctctttcttttgggtgtcctgttgctaatctctcctgtccttgtgcagGAAGTTGATGAAAGGGGCCAAAAGTTTGAGAGATTGAGGCGGTGAAGAAACCACAAAAACAGGAATCCCAAAGTGACCCAAGGCAGGAAAAAAAAAAGGG
                             tgctaat  putative branch site (score: 2)
                                   tctctcctgtccttgt  CT-rich tract
          tttctttt  TA-rich tract