1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtaacgctatagaagctctcttattgtgtgattctaacattttcaccatgacgaatttcagcatgtagtcgttactatctttgtcactttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCAT
species | Oryza sativa |
transcript | LOC_Os05g01040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAG GTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTEST: gi|58596197|gb|CK006725.1|CK006725
genomic: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGgtactgcact ... ttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACT
EST: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAG GTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTEST: gi|58606504|gb|CK034537.1|CK034537
genomic: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGgtactgcact ... ttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACT
EST: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAG GTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACT
genomic: CATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGgtactgcact ... ttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACT
caccatgacgaatttcagcatgtagtcgttactatctttgtcactttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCAT
ctatctttgtcacttt CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtaacgctatagaagctctcttattgtgtgattctaacattttcaccatgacgaatttcagcatgtagtcgttactatctttgtcactttttcttcagGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCAT
- - - - - - - - - - - - - - - tgattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta