1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taagcagtgcctctgatgatgagtgaggctgagctgatttcagcagatttcgatgaccggtgctattagttgttaattgcagcttgtgtatcttttgcagTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGA
species | Oryza sativa |
transcript | LOC_Os04g59130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGGGAGGGGAAGGGCGCCGTCGTCCTG TTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGEST: gi|86905530|gb|CI285493.1|CI285493
genomic: GGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGgtgagcatcc ... tcttttgcagTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAG
EST: CTCGCGAGAGCAGAGCA-GGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTG TTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAG
genomic: CTCGCGAGAGCAGAGCAGGGGAGGGGGAGGGGAAGGGCGCCGTCGTCCTGgtgagcatcc ... tcttttgcagTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAG
gatttcgatgaccggtgctattagttgttaattgcagcttgtgtatcttttgcagTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGA
tgttaat putative branch site (score: 15)
tatctttt putative PPT
tattagttgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagcagtgcctctgatgatgagtgaggctgagctgatttcagcagatttcgatgaccggtgctattagttgttaattgcagcttgtgtatcttttgcagTTGTTCACTCCTGACCTGCATCACATCTGGAGATGTCTTTCCGCAGCATAGTTCGTGATTTCAGGGACAGTTTCGGGACTCTATCCAAGCGGAGTTTCGA
- -gcagtgc
- - - - - - ctgatga
- - - - - - - - - - - - gaggctg
- - - - - - - - - - - - - - - - gctgatt
- - - - - - - - - - - - - - - - - - - - cagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcagc