1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggctgcagctcaagctaattaaaaatatattttttttttcattctgatagcagctatattgatgcttgatctatggttcctattatgatatgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCCCCTAAGCTCAACGAGAGGATCCTGTCCTCCTTGTCGAGGAGATCAGTA
species | Oryza sativa |
transcript | LOC_Os04g59040.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|88732604|gb|CI755781.1|CI755781
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|86848615|gb|CI293930.1|CI293930
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|2309908|gb|C26063.1|C26063
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCNCAGGCGCGCEST: gi|88721865|gb|CI743377.1|CI743377
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|286879|gb|D15686.1|D15686
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGNCACTCCAATCCAAG GAGGATGAGTNAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|88726501|gb|CI750156.1|CI750156
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|33684220|gb|CF312459.1|CF312459
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|86907275|gb|CI292840.1|CI292840
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|4878364|gb|AU062663.1|AU062663
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|88423146|gb|CI613447.1|CI613447
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|88742766|gb|CI766274.1|CI766274
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|163927162|gb|EG710251.1|EG710251
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|88405920|gb|CI591315.1|CI591315
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGGTGGGCAGCCCAGGCGCGCEST: gi|88427290|gb|CI586838.1|CI586838
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|25799147|gb|CA755108.1|CA755108
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCEST: gi|163925905|gb|EG712281.1|EG712281
genomic: TTCGCCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
EST: CCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAG GAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
genomic: CCGCCGCCGCCACCTTCCACCCCTTCAGCCGCCACTCCAATCCAAGgtatcctctc ... atgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGC
tgatagcagctatattgatgcttgatctatggttcctattatgatatgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCCCCTAAGCTCAACGAGAGGATCCTGTCCTCCTTGTCGAGGAGATCAGTA
tattatgatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctgcagctcaagctaattaaaaatatattttttttttcattctgatagcagctatattgatgcttgatctatggttcctattatgatatgatcatagGAGGATGAGTGAAGAGGACACCAATGCTGCTGCTGGGCAGCCCAGGCGCGCCCCTAAGCTCAACGAGAGGATCCTGTCCTCCTTGTCGAGGAGATCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA