1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgcgtctctaggcccccctctctctctcgatttgatcggtttgatctgtggtgccctaggtttgatctgtggatttattttttttcttgttttgtgggggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG
species | Oryza sativa |
transcript | LOC_Os04g57220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGGAGCGCCCCTTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|38474282|gb|CF958414.1|CF958414
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: CCGCTACCACTGANNNNNNNNNNNTCGCCGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|3763269|gb|AU030021.1|AU030021
genomic: CCGCTACCACTGA--CCCCCCCCCTCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCGCCGGTCG GTTTTGATCGATGGCGTCCAAGA-GATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|4880425|gb|AU064724.1|AU064724
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|58599461|gb|CK009989.1|CK009989
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCG-C---CG GGTTTGATCGATGGCGTCCAAGAGG-TCCTGAAGGAGTTGAAGGACCTGCAEST: gi|218504761|gb|FG960866.1|FG960866
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCG-C---CG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|218491681|gb|FG954119.1|FG954119
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCG-C---CG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|1632631|gb|C20360.1|C20360
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: CGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|58593797|gb|CF992105.1|CF992105
genomic: CGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: CCGGAGCGCCCCGGTCGGCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|8527887|gb|AU092702.1|AU092702
genomic: CCGGAGCGCCCC-GTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGANCCCCGTCGCCGGGTCG GGTTTGATCGATGNCGTCCAAGAGGATCCCTGAAGGAGTTGAAGGACCTGEST: gi|218488112|gb|FG949877.1|FG949877
genomic: TCGCCGGAGCGCCCCGTCGCC-GGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGAT-CCTGAAGGAGTTGAAGGACCTG
EST: CGCCGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|29680725|gb|CB677000.1|CB677000
genomic: CGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|86599825|gb|CI255987.1|CI255987
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: CGGAGCGCCCCGTCGCCGGTCG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAEST: gi|218482001|gb|FG956573.1|FG956573
genomic: CGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: TCGCCGGAGCGCCCCGTCG-C---CG GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
gccctaggtttgatctgtggatttattttttttcttgttttgtgggggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG
gtttgat putative branch site (score: 5)
atttattttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgtctctaggcccccctctctctctcgatttgatcggtttgatctgtggtgccctaggtttgatctgtggatttattttttttcttgttttgtgggggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG