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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtactccgtaccgcggcgcctctcccgctgtctcgcatactccagttgttagtacttatagtatctttacctaacaccatcgttgtgcgcttgtagGCTGTACTACGATAGCTCGCCGCAGCTTTCGTTCAAGCATGTTTACACCCGTCGAGCGGTGGTTCCTGGTTCGATTATAGTCGATG

Basic information

species Oryza sativa
transcript LOC_Os04g57210.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57210.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G043862_T01 (Zea mays), 3'ss of exon 1
gtccgtactccgtaccgcggcgcctctcccgctgtctcgcatactccagttgttagtacttatagtatctttacctaacaccatcgttgtgcgcttgtagGCTGTACTACGATAGCTCGCCGCAGCTTTCGTTCAAGCATGTTTACACCCGTCGAGCGGTGGTTCCTGGTTCGATTATAGTCGATG
        | ||| |||   | |  | | ||||     ||    |     ||      |     || | | | ||| ||  |   |  ||    ||||||||||||||||||||||||||||||||| |||||||| ||  |||||  ||  |||||| |||| || ||| |  | || || ||||
-------gtgcgtgccgtt-ctcgccactcgctacagggctgcttagttctgcccccgcgctcggtgt-tgtgcctgacgtcgctg--gtcattttgtagGCTGTACTACGATAGCTCGCCGCAGCTCTCGTTCAAACAGATTTACGGCCTCCGAGCGCTGGTCCCGGGTACTCTCATCGTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagttgttagtacttatagtatctttacctaacaccatcgttgtgcgcttgtagGCTGTACTACGATAGCTCGCCGCAGCTTTCGTTCAAGCATGTTTACACCCGTCGAGCGGTGGTTCCTGGTTCGATTATAGTCGATG
                           acctaac  putative branch site (score: 2)
              ttatagtatcttta  TA-rich tract