1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catctacgaaatgcgaacccagtgcattgtttagcctgaaattccagcatgaccgttgtttgttttctcaaatagtaacatctggactgtacaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG
species | Oryza sativa |
transcript | LOC_Os04g56970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|58687955|gb|CK076642.1|CK076642
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|58688695|gb|CK077382.1|CK077382
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|29655620|gb|CB651895.1|CB651895
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|86885639|gb|CI309766.1|CI309766
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|88316287|gb|CI621526.1|CI621526
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGATGTCAACCGAATGATCGGCAGCGGC-TCCAG GGCATCGAATTTTATGACATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|88721274|gb|CI744573.1|CI744573
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|29655650|gb|CB651925.1|CB651925
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGEST: gi|29655649|gb|CB651924.1|CB651924
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
agcatgaccgttgtttgttttctcaaatagtaacatctggactgtacaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG
tagtaac putative branch site (score: 32)
aaatagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctacgaaatgcgaacccagtgcattgtttagcctgaaattccagcatgaccgttgtttgttttctcaaatagtaacatctggactgtacaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCGCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
catctac
- - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - -gcctgaa
- - - - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgg