1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tttgcatctggtatcctgtaatggttaggatttcccactccccggtacagtagtagtacttatctgcaaggactcacaatctgttccatggaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTTGATGGAGAAGGGACTCCACAAGTACT
species | Oryza sativa |
transcript | LOC_Os04g55730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCG GACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTTEST: gi|58606850|gb|CK034883.1|CK034883
genomic: TCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCGgtgagtagtt ... gaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTT
EST: GCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCG GACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTTEST: gi|29631589|gb|CB636598.1|CB636598
genomic: TCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCGgtgagtagtt ... gaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTT
EST: TCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCG GACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTT
genomic: TCCTCCTTCCGTCGCACTCCGGGAGCTTCGATTTCAGGGTCATCTCCGCGgtgagtagtt ... gaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTT
tacagtagtagtacttatctgcaaggactcacaatctgttccatggaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTTGATGGAGAAGGGACTCCACAAGTACT
gactcac putative branch site (score: 11)
tacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcatctggtatcctgtaatggttaggatttcccactccccggtacagtagtagtacttatctgcaaggactcacaatctgttccatggaatccacagGACCAATGTGGTGGAAAGGCATGCTTCATTGTGGACAACCATCCATTGTTTGATGGAGAAGGGACTCCACAAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tgcatct
- - - - - - -tcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctgca