1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcatgcgacactggacactctagagcaactgcataactttcagtattgtttatgaattatgcagctaatattcccactctggcacatgaatttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCTGGCTATCTTGAAGACCATTTTAACATCCACAAGCTTAG
species | Oryza sativa |
transcript | LOC_Os04g54474.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAG TATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCEST: gi|88761390|gb|CI770946.1|CI770946
genomic: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAGgtactaagtt ... atttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
EST: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAG TATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCEST: gi|88762353|gb|CI771909.1|CI771909
genomic: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAGgtactaagtt ... atttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
EST: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAG TATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCEST: gi|88761383|gb|CI770939.1|CI770939
genomic: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAGgtactaagtt ... atttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
EST: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAG TATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCEST: gi|88764644|gb|CI773762.1|CI773762
genomic: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAGgtactaagtt ... atttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
EST: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAG TATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
genomic: CAGTGCTCTACTTTGTAGGCCATCCATATTAGACGGAAGAACTTTATCAGgtactaagtt ... atttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCC
attgtttatgaattatgcagctaatattcccactctggcacatgaatttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCTGGCTATCTTGAAGACCATTTTAACATCCACAAGCTTAG
agctaat putative branch site (score: 10)
ttatgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgcgacactggacactctagagcaactgcataactttcagtattgtttatgaattatgcagctaatattcccactctggcacatgaatttatgcagTATTATTATTGGAGGAGACCAATTCAAGAATGATATAATGGAGCTTTACCCTGGCTATCTTGAAGACCATTTTAACATCCACAAGCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
ttcatgc
- - - - - -ctggaca
- - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatga