1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtggattctgcgtcgtcgattaggcttttgttctgttgcgcttcatgtgatttgctaccatgctatgcttgacatctccactagcagtaggcagtagcagtagctattccaagagttcttactctcttttgtgaaagctaatcctatttaatttgattttttaaactctggtttgtgttcggaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGG
species | Oryza sativa |
transcript | LOC_Os04g52710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCGGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|29658246|gb|CB654521.1|CB654521
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|88424747|gb|CI606546.1|CI606546
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|38471849|gb|CF955980.1|CF955980
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|88357594|gb|CI623648.1|CI623648
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|58668546|gb|CK057232.1|CK057232
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCEST: gi|218497506|gb|FG955300.1|FG955300
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
EST: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAG CGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
genomic: CGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGgtggattctg ... gaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGC
gctaatcctatttaatttgattttttaaactctggtttgtgttcggaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGG
ttctc CT-rich tract
tatttaatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggattctgcgtcgtcgattaggcttttgttctgttgcgcttcatgtgatttgctaccatgctatgcttgacatctccactagcagtaggcagtagcagtagctattccaagagttcttactctcttttgtgaaagctaatcctatttaatttgattttttaaactctggtttgtgttcggaattctcagCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGG
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