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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgatgatagaagtgcgctagtgtatactcctagcataaggttgggcagtatataggaatctattgtgctgaaagtaataaagggctttcaatctgcagGTGCTTGTGAAGAATGCTGACAATAATGTCGGAAGGATTGCCAAAGCAGTAGTACTTGATCACCCATGCCTTGATGATTCCCTGACAGAACATACTGAGC

Basic information

species Oryza sativa
transcript LOC_Os04g52690.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52690.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G445617_T02 (Zea mays), 3'ss of exon 2
aatgatgatagaagtgcgctagtgtatactcctagcataaggttgggcagtatataggaatctattgtgctgaaagtaataaag----------ggctttcaatctgcagGTGCTTGTGAAGAATGCTGACAATAATGTCGGAAGGATTGCCAAAGCAGTAGTACTTGATCACCCATGCCTTGATGATTCCCTGACAGAACATACTGAGC
        |  | ||||     |   | ||   |   |||   |||| | | | | ||| ||| || || | |   || ||||            |||    |||||||||||||||| |||||| ||||||||||||| || ||||||| |||||||||| |  ||| | |||| | ||||||  | |||    ||||||||||||| |
--------ttcaggtgcaacttttcgtgcttagatggtaaa--tgggtactgtgtgggattctgttctgttcattttagtaaaatatgatatgcagctactgatctgcagGTGCTTGTCAAGAATACTGACAATAATGTTGGGAGGATTGTCAAAGCAGTATTGTTTGGTAACCCGTCCCTTGACAAGTCCTGCTCAGAACATACTGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcagtatataggaatctattgtgctgaaagtaataaagggctttcaatctgcagGTGCTTGTGAAGAATGCTGACAATAATGTCGGAAGGATTGCCAAAGCAGTAGTACTTGATCACCCATGCCTTGATGATTCCCTGACAGAACATACTGAGC
                                         ctttc  CT-rich tract
                           aaagtaataaa  TA-rich tract